Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FMLEPLIK_31 | 85595 | 86329 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| FMLEPLIK_67 | 34092 | 36065 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FMLEPLIK_67 | 34092 | 36017 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| FMLEPLIK_31 | 85595 | 86329 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| FMLEPLIK_31 | 87101 | 88564 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| FMLEPLIK_31 | 88690 | 89904 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FMLEPLIK_31 | 85598 | 86329 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| FMLEPLIK_67 | 34095 | 36017 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| FMLEPLIK_31 | 87104 | 88564 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| FMLEPLIK_31 | 88681 | 89904 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| FMLEPLIK_24 | 146 | 726 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FMLEPLIK_1 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_2 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_3 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_4 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_5 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_6 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_7 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_8 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_9 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_10 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_11 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_12 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_13 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_14 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_16 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_17 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_18 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_19 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_20 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_21 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_22 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_23 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_24 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_25 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_26 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_27 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_28 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_29 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_30 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_31 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_32 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_33 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_34 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_35 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_36 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_37 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_38 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_39 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_40 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_41 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_42 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_43 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_44 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_45 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_46 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_47 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_48 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_49 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_50 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_51 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_52 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_53 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_54 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_55 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_56 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_57 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_58 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_59 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_60 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_61 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_62 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_63 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_64 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_65 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_66 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_67 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_68 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_69 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_70 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_71 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_72 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_73 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_74 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_75 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_76 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_77 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_78 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_79 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_80 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_81 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_82 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_83 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_84 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_85 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_86 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_87 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_88 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_89 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_90 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_91 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_92 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_93 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_94 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_95 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_96 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_97 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_98 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_99 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_100 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_101 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_102 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_103 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_104 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_105 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_106 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_107 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_108 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_109 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_110 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_111 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_112 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_113 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_114 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_115 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_116 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_117 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_118 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_119 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_120 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_121 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_122 | 0.0 | 1.0 | 0.0 |
| FMLEPLIK_123 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_124 | 1.0 | 0.0 | 1.0 |
| FMLEPLIK_125 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FMLEPLIK_44 | 28022 | 38397 | False | Unknown | VOG3992, |
| FMLEPLIK_70 | 88501 | 95986 | False | Siphoviridae | VOG0204, |
Phigaro v2.4.0 (Database: Jan. 2024 release)