Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 1 | 0 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JNAEJEIH_40 | 459849 | 463532 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.30 | 103.46 | NC_008618.1 |
| JNAEJEIH_85 | 110923 | 114249 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.46 | 100.09 | CP001840.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JNAEJEIH_44 | 1 | 435 | qnrB | QnrB family quinolone resistance pentapeptide repeat protein | PARTIAL_CONTIG_ENDX | 98.62 | 67.76 | WP_012954666.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JNAEJEIH_98 | 116 | 831 | virulence_ecoli | cea | Colicin E1 | 89.28 | 99.72 | CYDY01000022 |
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JNAEJEIH_44 | 1876 | 1989 | Col440I | 114 / 114 | 92.11 | CP023920.1 |
| JNAEJEIH_57 | 742 | 943 | Col8282 | 202 / 207 | 89.60 | DQ995352 |
| JNAEJEIH_38 | 472 | 591 | ColRNAI | 121 / 130 | 89.26 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JNAEJEIH_1 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_2 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_3 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_4 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_5 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_6 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_7 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_8 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_9 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_10 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_11 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_12 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_13 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_14 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_15 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_16 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_17 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_18 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_19 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_20 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_21 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_22 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_23 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_24 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_25 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_26 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_27 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_28 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_29 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_30 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_31 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_32 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_33 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_34 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_35 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_37 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_38 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_39 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_40 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_41 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_42 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_43 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_44 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_45 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_46 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_47 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_48 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_49 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_50 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_51 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_52 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_53 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_54 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_55 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_56 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_57 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_58 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_59 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_60 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_61 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_62 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_63 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_64 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_65 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_66 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_67 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_68 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_69 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_70 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_71 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_72 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_73 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_74 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_75 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_76 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_77 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_78 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_79 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_80 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_81 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_82 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_83 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_84 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_85 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_86 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_87 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_88 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_89 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_91 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_92 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_93 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_94 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_95 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_96 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_97 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_98 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_99 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_100 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_101 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_102 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_103 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_104 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_105 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_106 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_107 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_108 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_109 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_110 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_111 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_112 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_113 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_114 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_115 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_116 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_117 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_118 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_119 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_120 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_121 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_122 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_123 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_124 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_125 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_126 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_127 | 0.0 | 1.0 | 0.0 |
| JNAEJEIH_128 | 1.0 | 0.0 | 1.0 |
| JNAEJEIH_129 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JNAEJEIH_22 | 6032 | 11868 | False | Siphoviridae | VOG11075, VOG0585, VOG3304, VOG0010, VOG4602 |
| JNAEJEIH_96 | 10667 | 26860 | False | Myoviridae / Podoviridae | VOG4548, VOG5689, VOG0382, VOG0052, VOG8190, VOG2090 |
Phigaro v2.4.0 (Database: Jan. 2024 release)