Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HDJIMOGN_10 | 459540 | 463223 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.30 | 103.46 | NC_008618.1 |
| HDJIMOGN_41 | 116839 | 120165 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.46 | 100.09 | CP001840.1 |
| HDJIMOGN_29 | 654 | 1298 | QnrB19 | ARO:3002734 | QnrB19 | 100.00 | 105.61 | JX298080.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HDJIMOGN_29 | 654 | 1298 | qnrB19 | Ciprofloxacin | 100.00 | 100.00 | EU432277 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HDJIMOGN_29 | 654 | 1295 | qnrB19 | quinolone resistance pentapeptide repeat protein QnrB19 | ALLELEX | 100.00 | 100.00 | WP_012954666.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HDJIMOGN_1 | 0.0 | 1.0 | 0.0 |
| HDJIMOGN_2 | 0.0 | 1.0 | 0.0 |
| HDJIMOGN_3 | 0.0 | 1.0 | 0.0 |
| HDJIMOGN_4 | 0.0 | 1.0 | 0.0 |
| HDJIMOGN_5 | 1.0 | 0.0 | 1.0 |
| HDJIMOGN_6 | 1.0 | 0.0 | 1.0 |
| HDJIMOGN_8 | 0.0 | 1.0 | 0.0 |
| HDJIMOGN_9 | 1.0 | 0.0 | 1.0 |
| HDJIMOGN_10 | 0.0 | 1.0 | 0.0 |
| HDJIMOGN_11 | 1.0 | 0.0 | 1.0 |
| HDJIMOGN_12 | 0.0 | 1.0 | 0.0 |
| HDJIMOGN_14 | 0.0 | 1.0 | 0.0 |
| HDJIMOGN_15 | 1.0 | 0.0 | 1.0 |
| HDJIMOGN_16 | 1.0 | 0.0 | 1.0 |
| HDJIMOGN_18 | 1.0 | 0.0 | 1.0 |
| HDJIMOGN_19 | 1.0 | 0.0 | 1.0 |
| HDJIMOGN_20 | 0.0 | 1.0 | 0.0 |
| HDJIMOGN_21 | 1.0 | 0.0 | 1.0 |
| HDJIMOGN_22 | 0.0 | 1.0 | 0.0 |
| HDJIMOGN_23 | 1.0 | 0.0 | 1.0 |
| HDJIMOGN_25 | 1.0 | 0.0 | 1.0 |
| HDJIMOGN_26 | 1.0 | 0.0 | 1.0 |
| HDJIMOGN_27 | 1.0 | 0.0 | 1.0 |
| HDJIMOGN_28 | 1.0 | 0.0 | 1.0 |
| HDJIMOGN_29 | 1.0 | 0.0 | 1.0 |
| HDJIMOGN_31 | 0.0 | 1.0 | 0.0 |
| HDJIMOGN_32 | 1.0 | 0.0 | 1.0 |
| HDJIMOGN_33 | 1.0 | 0.0 | 1.0 |
| HDJIMOGN_34 | 1.0 | 0.0 | 1.0 |
| HDJIMOGN_35 | 1.0 | 0.0 | 1.0 |
| HDJIMOGN_36 | 1.0 | 0.0 | 1.0 |
| HDJIMOGN_38 | 1.0 | 0.0 | 1.0 |
| HDJIMOGN_39 | 1.0 | 0.0 | 1.0 |
| HDJIMOGN_40 | 0.0 | 1.0 | 0.0 |
| HDJIMOGN_41 | 0.0 | 1.0 | 0.0 |
| HDJIMOGN_42 | 0.0 | 1.0 | 0.0 |
| HDJIMOGN_43 | 0.0 | 1.0 | 0.0 |
| HDJIMOGN_44 | 0.0 | 1.0 | 0.0 |
| HDJIMOGN_45 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HDJIMOGN_2 | 6032 | 11868 | False | Siphoviridae | VOG11075, VOG0585, VOG3304, VOG0010, VOG4602 |
| HDJIMOGN_42 | 10667 | 26860 | False | Myoviridae / Podoviridae | VOG4548, VOG5689, VOG0382, VOG0052, VOG8190, VOG2090 |
Phigaro v2.4.0 (Database: Jan. 2024 release)