Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DGNHLHCD_11 | 40954 | 44637 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.30 | 103.46 | NC_008618.1 |
| DGNHLHCD_74 | 19652 | 22978 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.46 | 100.09 | CP001840.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DGNHLHCD_1 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_2 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_3 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_4 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_5 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_6 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_7 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_8 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_9 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_10 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_11 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_12 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_13 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_14 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_15 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_16 | 1.0 | 0.0 | 1.0 |
| DGNHLHCD_17 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_18 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_19 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_20 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_21 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_22 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_23 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_24 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_25 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_26 | 1.0 | 0.0 | 1.0 |
| DGNHLHCD_27 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_28 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_29 | 1.0 | 0.0 | 1.0 |
| DGNHLHCD_30 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_31 | 1.0 | 0.0 | 1.0 |
| DGNHLHCD_32 | 1.0 | 0.0 | 1.0 |
| DGNHLHCD_33 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_34 | 1.0 | 0.0 | 1.0 |
| DGNHLHCD_35 | 1.0 | 0.0 | 1.0 |
| DGNHLHCD_36 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_37 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_38 | 1.0 | 0.0 | 1.0 |
| DGNHLHCD_39 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_40 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_41 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_42 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_43 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_44 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_45 | 1.0 | 0.0 | 1.0 |
| DGNHLHCD_46 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_47 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_48 | 1.0 | 0.0 | 1.0 |
| DGNHLHCD_49 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_50 | 1.0 | 0.0 | 1.0 |
| DGNHLHCD_51 | 1.0 | 0.0 | 1.0 |
| DGNHLHCD_52 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_53 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_54 | 1.0 | 0.0 | 1.0 |
| DGNHLHCD_55 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_56 | 1.0 | 0.0 | 1.0 |
| DGNHLHCD_57 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_58 | 1.0 | 0.0 | 1.0 |
| DGNHLHCD_59 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_60 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_61 | 1.0 | 0.0 | 1.0 |
| DGNHLHCD_62 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_63 | 1.0 | 0.0 | 1.0 |
| DGNHLHCD_64 | 1.0 | 0.0 | 1.0 |
| DGNHLHCD_65 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_66 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_67 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_68 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_69 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_70 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_71 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_72 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_73 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_74 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_75 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_76 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_77 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_78 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_79 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_80 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_81 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_82 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_83 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_84 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_85 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_86 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_87 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_88 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_89 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_90 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_91 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_92 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_93 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_94 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_95 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_96 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_97 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_98 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_99 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_100 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_101 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_102 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_103 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_104 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_105 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_106 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_107 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_108 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_109 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_110 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_111 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_112 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_113 | 1.0 | 0.0 | 1.0 |
| DGNHLHCD_114 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_115 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_116 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_117 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_118 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_119 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_120 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_121 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_122 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_123 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_124 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_125 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_126 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_127 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_128 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_129 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_130 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_131 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_132 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_133 | 1.0 | 0.0 | 1.0 |
| DGNHLHCD_134 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_135 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_136 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_137 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_138 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_139 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_140 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_141 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_142 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_143 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_144 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_145 | 1.0 | 0.0 | 1.0 |
| DGNHLHCD_146 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_147 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_148 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_149 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_150 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_151 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_152 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_153 | 1.0 | 0.0 | 1.0 |
| DGNHLHCD_154 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_155 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_156 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_157 | 0.0 | 1.0 | 0.0 |
| DGNHLHCD_158 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)