Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JDMMJPDG_67 | 434311 | 437637 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.46 | 100.09 | CP001840.1 |
| JDMMJPDG_32 | 37891 | 41574 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.30 | 103.46 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JDMMJPDG_1 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_2 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_3 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_4 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_5 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_6 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_7 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_8 | 1.0 | 0.0 | 1.0 |
| JDMMJPDG_9 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_10 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_11 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_12 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_13 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_14 | 1.0 | 0.0 | 1.0 |
| JDMMJPDG_15 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_16 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_17 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_18 | 1.0 | 0.0 | 1.0 |
| JDMMJPDG_19 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_20 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_21 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_22 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_23 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_24 | 1.0 | 0.0 | 1.0 |
| JDMMJPDG_25 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_26 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_27 | 1.0 | 0.0 | 1.0 |
| JDMMJPDG_28 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_30 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_31 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_32 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_33 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_34 | 1.0 | 0.0 | 1.0 |
| JDMMJPDG_35 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_36 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_37 | 1.0 | 0.0 | 1.0 |
| JDMMJPDG_38 | 1.0 | 0.0 | 1.0 |
| JDMMJPDG_39 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_40 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_41 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_42 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_43 | 1.0 | 0.0 | 1.0 |
| JDMMJPDG_44 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_45 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_46 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_47 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_48 | 1.0 | 0.0 | 1.0 |
| JDMMJPDG_49 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_50 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_51 | 1.0 | 0.0 | 1.0 |
| JDMMJPDG_52 | 1.0 | 0.0 | 1.0 |
| JDMMJPDG_53 | 1.0 | 0.0 | 1.0 |
| JDMMJPDG_54 | 1.0 | 0.0 | 1.0 |
| JDMMJPDG_55 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_56 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_57 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_58 | 1.0 | 0.0 | 1.0 |
| JDMMJPDG_59 | 1.0 | 0.0 | 1.0 |
| JDMMJPDG_60 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_61 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_62 | 1.0 | 0.0 | 1.0 |
| JDMMJPDG_63 | 1.0 | 0.0 | 1.0 |
| JDMMJPDG_64 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_65 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_66 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_67 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_68 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_69 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_70 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_71 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_72 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_73 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_74 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_75 | 1.0 | 0.0 | 1.0 |
| JDMMJPDG_76 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_77 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_78 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_79 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_80 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_81 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_82 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_83 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_84 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_85 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_87 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_88 | 1.0 | 0.0 | 1.0 |
| JDMMJPDG_89 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_90 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_91 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_92 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_93 | 0.0 | 1.0 | 0.0 |
| JDMMJPDG_94 | 1.0 | 0.0 | 1.0 |
| JDMMJPDG_95 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JDMMJPDG_2 | 4011 | 12446 | False | Siphoviridae | VOG2090, VOG11075, VOG0585, VOG3304, VOG0010, VOG4602 |
| JDMMJPDG_80 | 10668 | 26861 | False | Myoviridae / Podoviridae | VOG4548, VOG5689, VOG0382, VOG0052, VOG8190, VOG2090 |
Phigaro v2.4.0 (Database: Jan. 2024 release)