Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GLPAEAKN_55 | 9097 | 8900 | CspA | 5.96e-29 | cold shock protein | 80.30 | 100.00 | CAA62903 |
| GLPAEAKN_55 | 9097 | 8903 | CspR | 2.59e-28 | cold shock protein | 81.54 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GLPAEAKN_1 | 1.0 | 0.0 | 1.0 |
| GLPAEAKN_2 | 1.0 | 0.0 | 1.0 |
| GLPAEAKN_4 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_5 | 1.0 | 0.0 | 1.0 |
| GLPAEAKN_7 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_8 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_9 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_10 | 1.0 | 0.0 | 1.0 |
| GLPAEAKN_11 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_12 | 1.0 | 0.0 | 1.0 |
| GLPAEAKN_13 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_14 | 1.0 | 0.0 | 1.0 |
| GLPAEAKN_18 | 1.0 | 0.0 | 1.0 |
| GLPAEAKN_19 | 1.0 | 0.0 | 1.0 |
| GLPAEAKN_20 | 1.0 | 0.0 | 1.0 |
| GLPAEAKN_21 | 1.0 | 0.0 | 1.0 |
| GLPAEAKN_22 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_23 | 1.0 | 0.0 | 1.0 |
| GLPAEAKN_24 | 1.0 | 0.0 | 1.0 |
| GLPAEAKN_25 | 1.0 | 0.0 | 1.0 |
| GLPAEAKN_26 | 1.0 | 0.0 | 1.0 |
| GLPAEAKN_27 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_33 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_44 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_50 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_51 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_52 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_53 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_54 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_55 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_56 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_57 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_58 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_59 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_60 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_61 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_62 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_63 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_64 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_65 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_66 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_67 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_68 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_69 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_70 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_71 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_72 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_73 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_74 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_75 | 1.0 | 0.0 | 1.0 |
| GLPAEAKN_76 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_77 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_78 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_79 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_80 | 1.0 | 0.0 | 1.0 |
| GLPAEAKN_81 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_82 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_83 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_84 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_85 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_86 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_87 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_88 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_89 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_90 | 1.0 | 0.0 | 1.0 |
| GLPAEAKN_91 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_92 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_93 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_94 | 1.0 | 0.0 | 1.0 |
| GLPAEAKN_95 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_96 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_97 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_98 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_99 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_100 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_101 | 1.0 | 0.0 | 1.0 |
| GLPAEAKN_102 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_103 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_104 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_105 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_106 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_107 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_108 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_109 | 1.0 | 0.0 | 1.0 |
| GLPAEAKN_110 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_111 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_113 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_114 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_115 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_116 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_117 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_118 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_119 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_120 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_121 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_122 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_123 | 1.0 | 0.0 | 1.0 |
| GLPAEAKN_124 | 1.0 | 0.0 | 1.0 |
| GLPAEAKN_125 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_126 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_127 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_128 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_129 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_130 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_131 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_132 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_133 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_134 | 1.0 | 0.0 | 1.0 |
| GLPAEAKN_135 | 1.0 | 0.0 | 1.0 |
| GLPAEAKN_136 | 1.0 | 0.0 | 1.0 |
| GLPAEAKN_137 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_138 | 1.0 | 0.0 | 1.0 |
| GLPAEAKN_139 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_140 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_141 | 1.0 | 0.0 | 1.0 |
| GLPAEAKN_142 | 0.0 | 1.0 | 0.0 |
| GLPAEAKN_143 | 1.0 | 0.0 | 1.0 |
| GLPAEAKN_144 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GLPAEAKN_67 | 69867 | 74789 | False | Myoviridae | VOG7424, VOG6422, VOG4821, VOG0862, VOG2215, VOG9667, VOG4552 |
| GLPAEAKN_67 | 79602 | 112983 | False | Siphoviridae | VOG0226, VOG4566, VOG0198, VOG4841, VOG4581, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG6698, VOG8263, VOG0801, VOG3462, VOG10972, VOG9997, VOG4856, VOG10223, VOG8917, VOG0703 |
| GLPAEAKN_100 | 37282 | 63866 | True | Siphoviridae | VOG4567, VOG0221, VOG0221, VOG0221, VOG9502, VOG0641, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4571, VOG4581, VOG8909, VOG0198, VOG4548, VOG0327, VOG4606, VOG0026, VOG0021 |
| GLPAEAKN_111 | 20263 | 38681 | False | Myoviridae | VOG0189, VOG5235, VOG0083, VOG0382, VOG0384, VOG0205, VOG0226, VOG6085, VOG0025, VOG8295 |
Phigaro v2.4.0 (Database: Jan. 2024 release)