Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ADLEEJPL_70 | 4841 | 5326 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| ADLEEJPL_70 | 4841 | 5326 | lnu(A) | Lincomycin | 98.77 | 100.00 | M14039 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ADLEEJPL_70 | 4844 | 5326 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ADLEEJPL_73 | 6254 | 6060 | CspA | 8.74e-29 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ADLEEJPL_1 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_11 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_22 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_33 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_40 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_41 | 1.0 | 0.0 | 1.0 |
| ADLEEJPL_42 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_43 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_44 | 1.0 | 0.0 | 1.0 |
| ADLEEJPL_45 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_46 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_47 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_48 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_49 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_50 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_51 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_52 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_53 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_54 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_55 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_56 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_57 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_58 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_59 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_60 | 1.0 | 0.0 | 1.0 |
| ADLEEJPL_61 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_62 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_63 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_64 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_65 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_66 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_67 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_68 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_69 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_70 | 1.0 | 0.0 | 1.0 |
| ADLEEJPL_71 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_72 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_73 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_74 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_75 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_76 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_77 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_78 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_79 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_80 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_81 | 1.0 | 0.0 | 1.0 |
| ADLEEJPL_82 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_83 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_84 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_85 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_86 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_87 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_88 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_89 | 1.0 | 0.0 | 1.0 |
| ADLEEJPL_90 | 1.0 | 0.0 | 1.0 |
| ADLEEJPL_91 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_92 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_93 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_94 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_95 | 1.0 | 0.0 | 1.0 |
| ADLEEJPL_96 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_97 | 1.0 | 0.0 | 1.0 |
| ADLEEJPL_98 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_99 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_100 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_101 | 1.0 | 0.0 | 1.0 |
| ADLEEJPL_102 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_103 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_104 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_105 | 1.0 | 0.0 | 1.0 |
| ADLEEJPL_106 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_107 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_108 | 1.0 | 0.0 | 1.0 |
| ADLEEJPL_109 | 1.0 | 0.0 | 1.0 |
| ADLEEJPL_111 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_112 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_113 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_114 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_115 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_116 | 1.0 | 0.0 | 1.0 |
| ADLEEJPL_117 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_118 | 1.0 | 0.0 | 1.0 |
| ADLEEJPL_120 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_121 | 1.0 | 0.0 | 1.0 |
| ADLEEJPL_122 | 1.0 | 0.0 | 1.0 |
| ADLEEJPL_123 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_124 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_126 | 1.0 | 0.0 | 1.0 |
| ADLEEJPL_127 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_128 | 1.0 | 0.0 | 1.0 |
| ADLEEJPL_129 | 1.0 | 0.0 | 1.0 |
| ADLEEJPL_130 | 1.0 | 0.0 | 1.0 |
| ADLEEJPL_131 | 1.0 | 0.0 | 1.0 |
| ADLEEJPL_132 | 1.0 | 0.0 | 1.0 |
| ADLEEJPL_133 | 1.0 | 0.0 | 1.0 |
| ADLEEJPL_134 | 0.0 | 1.0 | 0.0 |
| ADLEEJPL_135 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ADLEEJPL_41 | 5780 | 38862 | False | Siphoviridae | VOG0703, VOG1637, VOG5070, VOG7534, VOG10972, VOG3462, VOG0801, VOG0817, VOG0725, VOG4329, VOG8555, VOG4713, VOG4711, VOG4555, VOG4564, VOG0720, VOG10227, VOG3699, VOG0376, VOG4373, VOG0198, VOG4693, VOG3307, VOG0586, VOG0189, VOG4799, VOG0226, VOG0514, VOG0283, VOG5278, VOG4925, VOG6450 |
| ADLEEJPL_44 | 4236 | 36456 | False | Siphoviridae | VOG2228, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG3307, VOG8065, VOG10303, VOG1183, VOG7043, VOG9531, VOG3307, VOG0198, VOG1063, VOG0796, VOG0796, VOG10227, VOG0720, VOG4564, VOG1300, VOG10914, VOG1319, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG0727, VOG4599, VOG5007, VOG0648 |
Phigaro v2.4.0 (Database: Jan. 2024 release)