Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ICJJPOHD_165 | 12662 | 13399 | ErmB | ARO:3000375 | ErmB | 99.18 | 98.79 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| ICJJPOHD_165 | 12662 | 13399 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | X72021 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ICJJPOHD_165 | 12662 | 13396 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | EXACTX | 100.00 | 100.00 | WP_001038795.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ICJJPOHD_208 | 48842 | 49036 | CspA | 3.23e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| ICJJPOHD_159 | 138 | 917 | repUS36 | 780 / 780 | 99.74 | AJ488494 |
| ICJJPOHD_18 | 306 | 992 | rep28 | 691 / 930 | 82.78 | CP003162 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ICJJPOHD_1 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_2 | 1.0 | 0.0 | 1.0 |
| ICJJPOHD_3 | 1.0 | 0.0 | 1.0 |
| ICJJPOHD_4 | 1.0 | 0.0 | 1.0 |
| ICJJPOHD_5 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_6 | 1.0 | 0.0 | 1.0 |
| ICJJPOHD_7 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_8 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_9 | 1.0 | 0.0 | 1.0 |
| ICJJPOHD_11 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_12 | 1.0 | 0.0 | 1.0 |
| ICJJPOHD_13 | 1.0 | 0.0 | 1.0 |
| ICJJPOHD_14 | 1.0 | 0.0 | 1.0 |
| ICJJPOHD_15 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_16 | 1.0 | 0.0 | 1.0 |
| ICJJPOHD_17 | 1.0 | 0.0 | 1.0 |
| ICJJPOHD_18 | 1.0 | 0.0 | 1.0 |
| ICJJPOHD_22 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_33 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_44 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_55 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_66 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_77 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_88 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_99 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_110 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_111 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_122 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_133 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_134 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_135 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_136 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_137 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_138 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_139 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_140 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_141 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_142 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_143 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_144 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_145 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_146 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_147 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_148 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_149 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_150 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_151 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_152 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_153 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_154 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_155 | 1.0 | 0.0 | 1.0 |
| ICJJPOHD_156 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_157 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_158 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_159 | 1.0 | 0.0 | 1.0 |
| ICJJPOHD_160 | 1.0 | 0.0 | 1.0 |
| ICJJPOHD_161 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_162 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_163 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_164 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_165 | 1.0 | 0.0 | 1.0 |
| ICJJPOHD_166 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_167 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_168 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_169 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_170 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_171 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_172 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_173 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_174 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_175 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_176 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_177 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_178 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_179 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_180 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_181 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_182 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_183 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_184 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_185 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_186 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_187 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_188 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_189 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_190 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_191 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_192 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_193 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_194 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_196 | 1.0 | 0.0 | 1.0 |
| ICJJPOHD_197 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_198 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_199 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_200 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_201 | 1.0 | 0.0 | 1.0 |
| ICJJPOHD_203 | 1.0 | 0.0 | 1.0 |
| ICJJPOHD_204 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_205 | 1.0 | 0.0 | 1.0 |
| ICJJPOHD_207 | 1.0 | 0.0 | 1.0 |
| ICJJPOHD_208 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_209 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_210 | 1.0 | 0.0 | 1.0 |
| ICJJPOHD_211 | 1.0 | 0.0 | 1.0 |
| ICJJPOHD_212 | 1.0 | 0.0 | 1.0 |
| ICJJPOHD_213 | 0.0 | 1.0 | 0.0 |
| ICJJPOHD_214 | 1.0 | 0.0 | 1.0 |
| ICJJPOHD_216 | 1.0 | 0.0 | 1.0 |
| ICJJPOHD_217 | 1.0 | 0.0 | 1.0 |
| ICJJPOHD_218 | 1.0 | 0.0 | 1.0 |
| ICJJPOHD_219 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ICJJPOHD_11 | 18456 | 19353 | False | Unknown | VOG10104 |
| ICJJPOHD_142 | 15909 | 44964 | False | Siphoviridae | VOG10223, VOG4865, VOG0054, VOG1637, VOG4856, VOG10972, VOG0801, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841, VOG1345, VOG3616, VOG4570, VOG0198, VOG4606 |
Phigaro v2.4.0 (Database: Jan. 2024 release)