Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PNOJOCLH_70 | 76543 | 76737 | CspA | 4.85e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PNOJOCLH_11 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_22 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_33 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_44 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_53 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_54 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_55 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_56 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_57 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_58 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_59 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_60 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_61 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_62 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_63 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_64 | 1.0 | 0.0 | 1.0 |
| PNOJOCLH_65 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_66 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_67 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_68 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_69 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_70 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_71 | 1.0 | 0.0 | 1.0 |
| PNOJOCLH_72 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_73 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_74 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_75 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_76 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_77 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_78 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_79 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_80 | 1.0 | 0.0 | 1.0 |
| PNOJOCLH_81 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_82 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_83 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_84 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_85 | 1.0 | 0.0 | 1.0 |
| PNOJOCLH_86 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_87 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_88 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_89 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_90 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_91 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_92 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_93 | 1.0 | 0.0 | 1.0 |
| PNOJOCLH_94 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_95 | 1.0 | 0.0 | 1.0 |
| PNOJOCLH_96 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_97 | 1.0 | 0.0 | 1.0 |
| PNOJOCLH_98 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_99 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_100 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_101 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_102 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_103 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_104 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_105 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_106 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_107 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_108 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_109 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_110 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_111 | 1.0 | 0.0 | 1.0 |
| PNOJOCLH_112 | 1.0 | 0.0 | 1.0 |
| PNOJOCLH_113 | 1.0 | 0.0 | 1.0 |
| PNOJOCLH_114 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_115 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_116 | 1.0 | 0.0 | 1.0 |
| PNOJOCLH_117 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_118 | 1.0 | 0.0 | 1.0 |
| PNOJOCLH_119 | 1.0 | 0.0 | 1.0 |
| PNOJOCLH_120 | 1.0 | 0.0 | 1.0 |
| PNOJOCLH_122 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_123 | 1.0 | 0.0 | 1.0 |
| PNOJOCLH_124 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_125 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_127 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_128 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_129 | 1.0 | 0.0 | 1.0 |
| PNOJOCLH_130 | 1.0 | 0.0 | 1.0 |
| PNOJOCLH_133 | 1.0 | 0.0 | 1.0 |
| PNOJOCLH_134 | 1.0 | 0.0 | 1.0 |
| PNOJOCLH_135 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_136 | 0.0 | 1.0 | 0.0 |
| PNOJOCLH_137 | 1.0 | 0.0 | 1.0 |
| PNOJOCLH_138 | 1.0 | 0.0 | 1.0 |
| PNOJOCLH_139 | 1.0 | 0.0 | 1.0 |
| PNOJOCLH_140 | 1.0 | 0.0 | 1.0 |
| PNOJOCLH_143 | 1.0 | 0.0 | 1.0 |
| PNOJOCLH_144 | 1.0 | 0.0 | 1.0 |
| PNOJOCLH_147 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PNOJOCLH_64 | 5326 | 36118 | False | Siphoviridae | VOG3622, VOG2228, VOG0321, VOG4548, VOG0322, VOG0052, VOG6545, VOG4632, VOG4609, VOG0327, VOG4010, VOG9669, VOG3307, VOG8065, VOG1183, VOG0198, VOG8946, VOG0796, VOG10227, VOG0720, VOG4564, VOG7533, VOG10914, VOG1319, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4633, VOG4910, VOG3077 |
| PNOJOCLH_66 | 6162 | 28195 | False | Siphoviridae | VOG0052, VOG7438, VOG1047, VOG0021, VOG0026, VOG4606, VOG0327, VOG4548, VOG0198, VOG4581, VOG4571, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641, VOG9502 |
| PNOJOCLH_73 | 18179 | 19284 | False | Unknown | VOG9409, VOG0641 |
| PNOJOCLH_81 | 4609 | 30991 | False | Siphoviridae | VOG4824, VOG0703, VOG0641, VOG9707, VOG4887, VOG4205, VOG3462, VOG0801, VOG6163, VOG9471, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG0202, VOG4544, VOG4581, VOG4841, VOG0866 |
Phigaro v2.4.0 (Database: Jan. 2024 release)