Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OCHNKFKD_126 | 4841 | 5326 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OCHNKFKD_126 | 4841 | 5326 | lnu(A) | Lincomycin | 98.77 | 100.00 | M14039 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OCHNKFKD_126 | 4844 | 5326 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OCHNKFKD_128 | 6254 | 6060 | CspA | 8.74e-29 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OCHNKFKD_1 | 1.0 | 0.0 | 1.0 |
| OCHNKFKD_2 | 1.0 | 0.0 | 1.0 |
| OCHNKFKD_3 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_11 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_22 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_33 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_44 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_55 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_66 | 1.0 | 0.0 | 1.0 |
| OCHNKFKD_77 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_88 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_99 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_102 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_103 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_104 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_105 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_106 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_107 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_108 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_109 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_110 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_111 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_112 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_113 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_114 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_115 | 1.0 | 0.0 | 1.0 |
| OCHNKFKD_116 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_117 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_118 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_119 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_120 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_121 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_122 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_123 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_124 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_125 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_126 | 1.0 | 0.0 | 1.0 |
| OCHNKFKD_127 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_128 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_129 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_130 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_131 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_132 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_133 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_134 | 1.0 | 0.0 | 1.0 |
| OCHNKFKD_135 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_136 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_137 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_138 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_139 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_140 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_141 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_142 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_143 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_144 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_145 | 1.0 | 0.0 | 1.0 |
| OCHNKFKD_146 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_147 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_148 | 1.0 | 0.0 | 1.0 |
| OCHNKFKD_149 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_150 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_151 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_152 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_153 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_154 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_155 | 1.0 | 0.0 | 1.0 |
| OCHNKFKD_156 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_157 | 1.0 | 0.0 | 1.0 |
| OCHNKFKD_158 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_159 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_160 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_161 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_162 | 1.0 | 0.0 | 1.0 |
| OCHNKFKD_163 | 1.0 | 0.0 | 1.0 |
| OCHNKFKD_165 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_166 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_167 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_168 | 1.0 | 0.0 | 1.0 |
| OCHNKFKD_169 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_170 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_171 | 1.0 | 0.0 | 1.0 |
| OCHNKFKD_172 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_173 | 1.0 | 0.0 | 1.0 |
| OCHNKFKD_175 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_176 | 1.0 | 0.0 | 1.0 |
| OCHNKFKD_177 | 1.0 | 0.0 | 1.0 |
| OCHNKFKD_178 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_180 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_181 | 1.0 | 0.0 | 1.0 |
| OCHNKFKD_182 | 1.0 | 0.0 | 1.0 |
| OCHNKFKD_183 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_184 | 1.0 | 0.0 | 1.0 |
| OCHNKFKD_185 | 1.0 | 0.0 | 1.0 |
| OCHNKFKD_186 | 1.0 | 0.0 | 1.0 |
| OCHNKFKD_187 | 1.0 | 0.0 | 1.0 |
| OCHNKFKD_188 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_189 | 0.0 | 1.0 | 0.0 |
| OCHNKFKD_190 | 1.0 | 0.0 | 1.0 |
| OCHNKFKD_191 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OCHNKFKD_66 | 5113 | 37333 | False | Siphoviridae | VOG2228, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG3307, VOG8065, VOG10303, VOG1183, VOG7043, VOG9531, VOG3307, VOG0198, VOG1063, VOG0796, VOG0796, VOG10227, VOG0720, VOG4564, VOG1300, VOG10914, VOG1319, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG0727, VOG4599, VOG5007, VOG0648 |
| OCHNKFKD_103 | 66761 | 104884 | False | Siphoviridae | VOG8520, VOG5063, VOG4552, VOG0979, VOG6450, VOG11077, VOG4925, VOG5278, VOG0283, VOG0514, VOG0226, VOG4799, VOG0189, VOG0586, VOG3307, VOG4693, VOG0198, VOG4373, VOG0376, VOG3699, VOG10227, VOG0720, VOG4564, VOG4555, VOG4711, VOG4713, VOG8555, VOG4329, VOG0725, VOG0817, VOG0801, VOG3462, VOG10972, VOG7534, VOG5070, VOG1637, VOG0703 |
Phigaro v2.4.0 (Database: Jan. 2024 release)