Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JLGOJIDH_95 | 5034 | 5519 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JLGOJIDH_95 | 5034 | 5519 | lnu(A) | Lincomycin | 98.77 | 100.00 | M14039 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JLGOJIDH_95 | 5034 | 5516 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JLGOJIDH_104 | 6254 | 6060 | CspA | 8.11e-29 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JLGOJIDH_1 | 1.0 | 0.0 | 1.0 |
| JLGOJIDH_2 | 1.0 | 0.0 | 1.0 |
| JLGOJIDH_3 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_4 | 1.0 | 0.0 | 1.0 |
| JLGOJIDH_5 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_6 | 1.0 | 0.0 | 1.0 |
| JLGOJIDH_11 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_22 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_33 | 1.0 | 0.0 | 1.0 |
| JLGOJIDH_44 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_55 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_65 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_66 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_67 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_68 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_69 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_70 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_71 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_72 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_73 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_74 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_75 | 1.0 | 0.0 | 1.0 |
| JLGOJIDH_76 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_77 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_78 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_79 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_80 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_81 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_82 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_83 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_84 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_85 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_86 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_87 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_88 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_89 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_90 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_91 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_92 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_93 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_94 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_95 | 1.0 | 0.0 | 1.0 |
| JLGOJIDH_96 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_97 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_98 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_99 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_100 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_101 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_102 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_103 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_104 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_105 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_106 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_107 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_108 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_109 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_110 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_111 | 1.0 | 0.0 | 1.0 |
| JLGOJIDH_112 | 1.0 | 0.0 | 1.0 |
| JLGOJIDH_113 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_114 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_115 | 1.0 | 0.0 | 1.0 |
| JLGOJIDH_116 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_117 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_118 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_119 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_120 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_121 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_122 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_123 | 1.0 | 0.0 | 1.0 |
| JLGOJIDH_124 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_125 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_126 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_127 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_128 | 1.0 | 0.0 | 1.0 |
| JLGOJIDH_129 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_130 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_131 | 1.0 | 0.0 | 1.0 |
| JLGOJIDH_132 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_133 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_134 | 1.0 | 0.0 | 1.0 |
| JLGOJIDH_135 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_136 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_137 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_138 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_140 | 1.0 | 0.0 | 1.0 |
| JLGOJIDH_142 | 1.0 | 0.0 | 1.0 |
| JLGOJIDH_143 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_144 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_145 | 1.0 | 0.0 | 1.0 |
| JLGOJIDH_146 | 1.0 | 0.0 | 1.0 |
| JLGOJIDH_147 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_148 | 1.0 | 0.0 | 1.0 |
| JLGOJIDH_149 | 1.0 | 0.0 | 1.0 |
| JLGOJIDH_150 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_151 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_152 | 1.0 | 0.0 | 1.0 |
| JLGOJIDH_153 | 1.0 | 0.0 | 1.0 |
| JLGOJIDH_154 | 0.0 | 1.0 | 0.0 |
| JLGOJIDH_156 | 1.0 | 0.0 | 1.0 |
| JLGOJIDH_157 | 1.0 | 0.0 | 1.0 |
| JLGOJIDH_158 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JLGOJIDH_33 | 16890 | 46922 | False | Siphoviridae | VOG0195, VOG0275, VOG5278, VOG5998, VOG5562, VOG5280, VOG5317, VOG8254, VOG0686, VOG6140, VOG7111, VOG0198, VOG0866, VOG4841, VOG4581, VOG4544, VOG0202, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG4904, VOG4660, VOG6281, VOG4705 |
Phigaro v2.4.0 (Database: Jan. 2024 release)