Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LBFCKCGM_125 | 48805 | 48999 | CspA | 3.22e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LBFCKCGM_64 | 13206 | 13985 | repUS36 | 780 / 780 | 99.74 | AJ488494 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LBFCKCGM_1 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_2 | 1.0 | 0.0 | 1.0 |
| LBFCKCGM_3 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_4 | 1.0 | 0.0 | 1.0 |
| LBFCKCGM_5 | 1.0 | 0.0 | 1.0 |
| LBFCKCGM_6 | 1.0 | 0.0 | 1.0 |
| LBFCKCGM_7 | 1.0 | 0.0 | 1.0 |
| LBFCKCGM_11 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_22 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_29 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_30 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_31 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_32 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_33 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_34 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_35 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_36 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_37 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_38 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_39 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_40 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_41 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_42 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_43 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_44 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_45 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_46 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_47 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_48 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_49 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_50 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_51 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_52 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_53 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_54 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_55 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_56 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_57 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_58 | 1.0 | 0.0 | 1.0 |
| LBFCKCGM_59 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_60 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_61 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_62 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_63 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_64 | 1.0 | 0.0 | 1.0 |
| LBFCKCGM_65 | 1.0 | 0.0 | 1.0 |
| LBFCKCGM_66 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_67 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_68 | 1.0 | 0.0 | 1.0 |
| LBFCKCGM_69 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_70 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_71 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_72 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_73 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_74 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_75 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_76 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_77 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_78 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_79 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_80 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_81 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_82 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_83 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_84 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_85 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_86 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_87 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_88 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_89 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_90 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_91 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_92 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_93 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_94 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_95 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_96 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_97 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_98 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_99 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_100 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_101 | 1.0 | 0.0 | 1.0 |
| LBFCKCGM_103 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_104 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_105 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_106 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_107 | 1.0 | 0.0 | 1.0 |
| LBFCKCGM_109 | 1.0 | 0.0 | 1.0 |
| LBFCKCGM_110 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_111 | 1.0 | 0.0 | 1.0 |
| LBFCKCGM_112 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_113 | 1.0 | 0.0 | 1.0 |
| LBFCKCGM_114 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_115 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_116 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_117 | 1.0 | 0.0 | 1.0 |
| LBFCKCGM_119 | 1.0 | 0.0 | 1.0 |
| LBFCKCGM_120 | 0.0 | 1.0 | 0.0 |
| LBFCKCGM_121 | 1.0 | 0.0 | 1.0 |
| LBFCKCGM_122 | 1.0 | 0.0 | 1.0 |
| LBFCKCGM_124 | 1.0 | 0.0 | 1.0 |
| LBFCKCGM_125 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LBFCKCGM_29 | 25986 | 26883 | False | Unknown | VOG0226 |
| LBFCKCGM_48 | 12720 | 44964 | False | Siphoviridae | VOG0822, VOG10223, VOG4865, VOG0054, VOG1637, VOG4856, VOG10972, VOG0801, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841, VOG1345, VOG3616, VOG4570, VOG0198, VOG4606 |
Phigaro v2.4.0 (Database: Jan. 2024 release)