Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NKENPGKA_68 | 67822 | 68016 | CspA | 4.36e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NKENPGKA_1 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_2 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_3 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_4 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_5 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_6 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_7 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_8 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_9 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_10 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_11 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_12 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_13 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_14 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_15 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_16 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_17 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_18 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_19 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_20 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_21 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_22 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_23 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_24 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_25 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_26 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_27 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_28 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_29 | 1.0 | 0.0 | 1.0 |
| NKENPGKA_30 | 1.0 | 0.0 | 1.0 |
| NKENPGKA_31 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_32 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_33 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_34 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_35 | 1.0 | 0.0 | 1.0 |
| NKENPGKA_36 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_37 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_38 | 1.0 | 0.0 | 1.0 |
| NKENPGKA_39 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_40 | 1.0 | 0.0 | 1.0 |
| NKENPGKA_41 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_42 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_44 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_45 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_46 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_47 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_48 | 1.0 | 0.0 | 1.0 |
| NKENPGKA_49 | 1.0 | 0.0 | 1.0 |
| NKENPGKA_51 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_55 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_65 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_66 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_67 | 0.0 | 1.0 | 0.0 |
| NKENPGKA_68 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NKENPGKA_1 | 17045 | 23568 | False | Siphoviridae | VOG0275, VOG3459, VOG0682, VOG0047, VOG3304, VOG4602, VOG9667, VOG7581, VOG2776, VOG1638, VOG8611 |
| NKENPGKA_1 | 35476 | 61741 | False | Siphoviridae | VOG0689, VOG9503, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG4713, VOG1330, VOG1900, VOG0704, VOG4634, VOG1333, VOG1334, VOG6163, VOG1335, VOG10608, VOG9888, VOG0648 |
| NKENPGKA_11 | 21546 | 49686 | False | Siphoviridae | VOG10593, VOG3462, VOG0801, VOG6163, VOG9471, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0866, VOG7111, VOG0686, VOG5317, VOG5280, VOG4010, VOG0195, VOG0195 |
Phigaro v2.4.0 (Database: Jan. 2024 release)