Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EEFEDOAA_50 | 75862 | 76056 | CspA | 4.82e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EEFEDOAA_11 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_19 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_20 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_21 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_22 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_23 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_24 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_25 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_26 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_27 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_28 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_29 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_30 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_31 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_32 | 1.0 | 0.0 | 1.0 |
| EEFEDOAA_33 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_34 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_35 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_36 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_37 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_38 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_39 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_40 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_41 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_42 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_43 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_44 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_45 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_46 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_47 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_48 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_49 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_50 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_51 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_52 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_53 | 1.0 | 0.0 | 1.0 |
| EEFEDOAA_54 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_55 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_56 | 1.0 | 0.0 | 1.0 |
| EEFEDOAA_57 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_58 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_59 | 1.0 | 0.0 | 1.0 |
| EEFEDOAA_60 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_61 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_62 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_63 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_64 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_65 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_66 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_67 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_68 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_69 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_70 | 1.0 | 0.0 | 1.0 |
| EEFEDOAA_71 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_72 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_73 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_74 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_75 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_76 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_77 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_78 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_79 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_80 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_81 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_82 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_83 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_84 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_85 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_86 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_87 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_88 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_89 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_90 | 1.0 | 0.0 | 1.0 |
| EEFEDOAA_91 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_92 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_93 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_94 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_95 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_96 | 1.0 | 0.0 | 1.0 |
| EEFEDOAA_98 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_99 | 1.0 | 0.0 | 1.0 |
| EEFEDOAA_100 | 1.0 | 0.0 | 1.0 |
| EEFEDOAA_101 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_102 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_103 | 1.0 | 0.0 | 1.0 |
| EEFEDOAA_105 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_106 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_107 | 1.0 | 0.0 | 1.0 |
| EEFEDOAA_108 | 1.0 | 0.0 | 1.0 |
| EEFEDOAA_109 | 1.0 | 0.0 | 1.0 |
| EEFEDOAA_110 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_111 | 0.0 | 1.0 | 0.0 |
| EEFEDOAA_112 | 1.0 | 0.0 | 1.0 |
| EEFEDOAA_116 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EEFEDOAA_26 | 20578 | 28309 | False | Siphoviridae | VOG0650, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544 |
| EEFEDOAA_28 | 1841 | 40232 | False | Siphoviridae | VOG0641, VOG0648, VOG9888, VOG10608, VOG1335, VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1900, VOG1330, VOG4713, VOG1887, VOG3434, VOG4555, VOG4564, VOG0720, VOG4544, VOG0796, VOG9503, VOG0689, VOG0686, VOG0198, VOG4693, VOG1183, VOG0938, VOG3307, VOG8482, VOG4552, VOG5133, VOG0189, VOG4566, VOG0514, VOG6545, VOG0322, VOG0535, VOG11077 |
| EEFEDOAA_39 | 17582 | 18479 | False | Unknown | VOG10104 |
| EEFEDOAA_61 | 6794 | 18317 | False | Siphoviridae | VOG9312, VOG9267, VOG9667, VOG5353, VOG2228, VOG0195, VOG0275, VOG5278, VOG5998, VOG5562, VOG5280, VOG5317, VOG0686, VOG7111, VOG0198 |
Phigaro v2.4.0 (Database: Jan. 2024 release)