Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HOBKFHII_81 | 63133 | 63327 | CspA | 4.06e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HOBKFHII_5 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_6 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_7 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_8 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_9 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_10 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_11 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_12 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_13 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_14 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_15 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_16 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_17 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_18 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_19 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_20 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_21 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_22 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_23 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_24 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_25 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_26 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_27 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_28 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_29 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_30 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_31 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_32 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_33 | 1.0 | 0.0 | 1.0 |
| HOBKFHII_34 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_35 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_36 | 1.0 | 0.0 | 1.0 |
| HOBKFHII_37 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_38 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_39 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_40 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_41 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_42 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_43 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_44 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_45 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_46 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_47 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_48 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_49 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_50 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_51 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_52 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_53 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_54 | 1.0 | 0.0 | 1.0 |
| HOBKFHII_55 | 1.0 | 0.0 | 1.0 |
| HOBKFHII_56 | 1.0 | 0.0 | 1.0 |
| HOBKFHII_57 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_58 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_59 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_60 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_61 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_62 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_63 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_64 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_65 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_66 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_67 | 1.0 | 0.0 | 1.0 |
| HOBKFHII_68 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_69 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_70 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_71 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_72 | 1.0 | 0.0 | 1.0 |
| HOBKFHII_73 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_74 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_75 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_76 | 1.0 | 0.0 | 1.0 |
| HOBKFHII_77 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_79 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_80 | 1.0 | 0.0 | 1.0 |
| HOBKFHII_81 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_82 | 1.0 | 0.0 | 1.0 |
| HOBKFHII_83 | 1.0 | 0.0 | 1.0 |
| HOBKFHII_85 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_86 | 1.0 | 0.0 | 1.0 |
| HOBKFHII_87 | 1.0 | 0.0 | 1.0 |
| HOBKFHII_88 | 1.0 | 0.0 | 1.0 |
| HOBKFHII_89 | 1.0 | 0.0 | 1.0 |
| HOBKFHII_90 | 1.0 | 0.0 | 1.0 |
| HOBKFHII_91 | 1.0 | 0.0 | 1.0 |
| HOBKFHII_92 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_93 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_94 | 0.0 | 1.0 | 0.0 |
| HOBKFHII_103 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HOBKFHII_15 | 8439 | 40243 | True | Siphoviridae | VOG4548, VOG0052, VOG7438, VOG1047, VOG0021, VOG0026, VOG4606, VOG0327, VOG4548, VOG0198, VOG4581, VOG4571, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641, VOG9502, VOG9409, VOG0221, VOG0221, VOG8978, VOG9081 |
| HOBKFHII_37 | 11072 | 51414 | False | Siphoviridae | VOG9998, VOG4824, VOG0054, VOG1637, VOG5070, VOG3463, VOG7534, VOG10972, VOG3462, VOG0801, VOG0817, VOG0725, VOG4329, VOG4713, VOG4711, VOG4555, VOG4564, VOG0720, VOG10227, VOG3699, VOG6542, VOG0866, VOG0866, VOG7207, VOG6793, VOG0198, VOG4693, VOG1183, VOG3307, VOG0586, VOG0189, VOG4566, VOG0186, VOG1309, VOG4763, VOG4552, VOG3851, VOG9667, VOG9267, VOG1796, VOG4662, VOG1638 |
Phigaro v2.4.0 (Database: Jan. 2024 release)