Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PLCOFLKA_33 | 6173 | 5979 | CspA | 2.68e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PLCOFLKA_1 | 1.0 | 0.0 | 1.0 |
| PLCOFLKA_3 | 1.0 | 0.0 | 1.0 |
| PLCOFLKA_4 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_5 | 1.0 | 0.0 | 1.0 |
| PLCOFLKA_6 | 1.0 | 0.0 | 1.0 |
| PLCOFLKA_8 | 1.0 | 0.0 | 1.0 |
| PLCOFLKA_9 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_10 | 1.0 | 0.0 | 1.0 |
| PLCOFLKA_11 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_13 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_22 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_31 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_32 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_33 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_34 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_35 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_36 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_37 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_38 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_39 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_40 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_41 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_42 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_43 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_44 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_45 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_46 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_47 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_48 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_49 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_50 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_51 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_53 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_54 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_55 | 1.0 | 0.0 | 1.0 |
| PLCOFLKA_56 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_57 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_58 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_59 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_60 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_61 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_62 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_63 | 1.0 | 0.0 | 1.0 |
| PLCOFLKA_64 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_65 | 1.0 | 0.0 | 1.0 |
| PLCOFLKA_66 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_67 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_68 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_69 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_70 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_71 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_72 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_73 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_74 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_75 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_76 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_77 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_78 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_79 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_80 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_81 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_82 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_83 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_84 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_85 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_86 | 1.0 | 0.0 | 1.0 |
| PLCOFLKA_87 | 1.0 | 0.0 | 1.0 |
| PLCOFLKA_88 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_89 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_90 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_91 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_92 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_93 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_94 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_95 | 1.0 | 0.0 | 1.0 |
| PLCOFLKA_96 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_97 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_98 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_99 | 1.0 | 0.0 | 1.0 |
| PLCOFLKA_100 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_101 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_102 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_103 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_104 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_105 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_106 | 1.0 | 0.0 | 1.0 |
| PLCOFLKA_107 | 1.0 | 0.0 | 1.0 |
| PLCOFLKA_108 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_109 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_110 | 1.0 | 0.0 | 1.0 |
| PLCOFLKA_111 | 1.0 | 0.0 | 1.0 |
| PLCOFLKA_113 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_114 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_115 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_116 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_117 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_118 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_119 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_120 | 1.0 | 0.0 | 1.0 |
| PLCOFLKA_122 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_123 | 1.0 | 0.0 | 1.0 |
| PLCOFLKA_124 | 0.0 | 1.0 | 0.0 |
| PLCOFLKA_126 | 1.0 | 0.0 | 1.0 |
| PLCOFLKA_127 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PLCOFLKA_39 | 46612 | 80619 | False | Siphoviridae | VOG1246, VOG8811, VOG0221, VOG6422, VOG4821, VOG0862, VOG9667, VOG7581, VOG4552, VOG5420, VOG9708, VOG0283, VOG0226, VOG5046, VOG0189, VOG8966, VOG0536, VOG3307, VOG0586, VOG3307, VOG1183, VOG4693, VOG0198, VOG0686, VOG4841, VOG4581, VOG1886, VOG4556, VOG4568, VOG0204, VOG0205, VOG0539, VOG0207, VOG4586, VOG0209, VOG6163, VOG0801, VOG3462, VOG3463 |
| PLCOFLKA_116 | 1225 | 24751 | False | Siphoviridae | VOG4856, VOG8224, VOG3462, VOG0801, VOG6163, VOG9471, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG6542, VOG0866, VOG0866, VOG0198, VOG7111, VOG0686 |
Phigaro v2.4.0 (Database: Jan. 2024 release)