Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CHDEFGKN_105 | 10216 | 12135 | tet(W) | ARO:3000194 | tet(W) | 97.03 | 100.00 | AJ222769.3 |
| CHDEFGKN_120 | 6985 | 7737 | ErmB | ARO:3000375 | ErmB | 98.37 | 100.81 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CHDEFGKN_120 | 6985 | 7737 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.60 | 100.00 | U48430 |
| CHDEFGKN_105 | 10216 | 12135 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.06 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CHDEFGKN_105 | 10219 | 12135 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.84 | 100.00 | WP_000691721.1 |
| CHDEFGKN_120 | 6985 | 7734 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 98.80 | 100.00 | WP_011018369.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CHDEFGKN_116 | 49008 | 49202 | CspA | 3.24e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CHDEFGKN_1 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_2 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_3 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_4 | 1.0 | 0.0 | 1.0 |
| CHDEFGKN_5 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_6 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_7 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_8 | 1.0 | 0.0 | 1.0 |
| CHDEFGKN_9 | 1.0 | 0.0 | 1.0 |
| CHDEFGKN_10 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_11 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_12 | 1.0 | 0.0 | 1.0 |
| CHDEFGKN_13 | 1.0 | 0.0 | 1.0 |
| CHDEFGKN_14 | 1.0 | 0.0 | 1.0 |
| CHDEFGKN_16 | 1.0 | 0.0 | 1.0 |
| CHDEFGKN_17 | 1.0 | 0.0 | 1.0 |
| CHDEFGKN_18 | 1.0 | 0.0 | 1.0 |
| CHDEFGKN_22 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_33 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_44 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_55 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_56 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_57 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_58 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_59 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_60 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_61 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_62 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_63 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_64 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_65 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_66 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_67 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_68 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_69 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_70 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_71 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_72 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_73 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_74 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_75 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_76 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_77 | 1.0 | 0.0 | 1.0 |
| CHDEFGKN_78 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_79 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_80 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_81 | 1.0 | 0.0 | 1.0 |
| CHDEFGKN_82 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_83 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_84 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_85 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_86 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_87 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_88 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_89 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_90 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_91 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_92 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_93 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_94 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_95 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_96 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_97 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_98 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_99 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_100 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_101 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_102 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_103 | 1.0 | 0.0 | 1.0 |
| CHDEFGKN_104 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_105 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_106 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_107 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_108 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_109 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_110 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_111 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_112 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_113 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_114 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_115 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_116 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_117 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_118 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_119 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_120 | 1.0 | 0.0 | 1.0 |
| CHDEFGKN_121 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_122 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_123 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_124 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_125 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_127 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_128 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_129 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_130 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_131 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_132 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_133 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_134 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_136 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_137 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_138 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_139 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_140 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_141 | 1.0 | 0.0 | 1.0 |
| CHDEFGKN_142 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_143 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_144 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_145 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_146 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_147 | 0.0 | 1.0 | 0.0 |
| CHDEFGKN_148 | 1.0 | 0.0 | 1.0 |
| CHDEFGKN_149 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)