Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NKMGLCHI_107 | 10216 | 12135 | tet(W) | ARO:3000194 | tet(W) | 97.03 | 100.00 | AJ222769.3 |
| NKMGLCHI_123 | 6985 | 7737 | ErmB | ARO:3000375 | ErmB | 98.37 | 100.81 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NKMGLCHI_123 | 6985 | 7737 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.60 | 100.00 | U48430 |
| NKMGLCHI_107 | 10216 | 12135 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.06 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NKMGLCHI_107 | 10219 | 12135 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.84 | 100.00 | WP_000691721.1 |
| NKMGLCHI_123 | 6985 | 7734 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 98.80 | 100.00 | WP_011018369.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NKMGLCHI_118 | 49008 | 49202 | CspA | 3.24e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NKMGLCHI_1 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_3 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_4 | 1.0 | 0.0 | 1.0 |
| NKMGLCHI_5 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_6 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_7 | 1.0 | 0.0 | 1.0 |
| NKMGLCHI_8 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_9 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_10 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_11 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_12 | 1.0 | 0.0 | 1.0 |
| NKMGLCHI_13 | 1.0 | 0.0 | 1.0 |
| NKMGLCHI_15 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_16 | 1.0 | 0.0 | 1.0 |
| NKMGLCHI_17 | 1.0 | 0.0 | 1.0 |
| NKMGLCHI_18 | 1.0 | 0.0 | 1.0 |
| NKMGLCHI_19 | 1.0 | 0.0 | 1.0 |
| NKMGLCHI_20 | 1.0 | 0.0 | 1.0 |
| NKMGLCHI_21 | 1.0 | 0.0 | 1.0 |
| NKMGLCHI_22 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_33 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_44 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_55 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_58 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_59 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_60 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_61 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_62 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_63 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_64 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_65 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_66 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_67 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_68 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_69 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_70 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_71 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_72 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_73 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_74 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_75 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_76 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_77 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_78 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_79 | 1.0 | 0.0 | 1.0 |
| NKMGLCHI_80 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_81 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_82 | 1.0 | 0.0 | 1.0 |
| NKMGLCHI_83 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_84 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_85 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_86 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_87 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_88 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_89 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_90 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_91 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_92 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_93 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_94 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_95 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_96 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_97 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_98 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_99 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_100 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_101 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_102 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_103 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_104 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_105 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_106 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_107 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_108 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_109 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_110 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_111 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_112 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_113 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_114 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_115 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_116 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_117 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_118 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_119 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_120 | 1.0 | 0.0 | 1.0 |
| NKMGLCHI_121 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_122 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_123 | 1.0 | 0.0 | 1.0 |
| NKMGLCHI_124 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_125 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_126 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_127 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_128 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_129 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_130 | 1.0 | 0.0 | 1.0 |
| NKMGLCHI_132 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_133 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_134 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_135 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_136 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_137 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_138 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_139 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_140 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_141 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_142 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_143 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_144 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_145 | 1.0 | 0.0 | 1.0 |
| NKMGLCHI_146 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_147 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_148 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_149 | 0.0 | 1.0 | 0.0 |
| NKMGLCHI_150 | 1.0 | 0.0 | 1.0 |
| NKMGLCHI_151 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)