Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FOFMOGFC_10 | 27842 | 27648 | CspA | 2.53e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FOFMOGFC_1 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_2 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_3 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_4 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_5 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_6 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_7 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_8 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_9 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_10 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_11 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_12 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_13 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_14 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_15 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_16 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_17 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_18 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_19 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_20 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_21 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_22 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_23 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_24 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_25 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_26 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_27 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_28 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_29 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_30 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_31 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_32 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_33 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_34 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_35 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_36 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_37 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_38 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_39 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_40 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_42 | 1.0 | 0.0 | 1.0 |
| FOFMOGFC_43 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_44 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_46 | 1.0 | 0.0 | 1.0 |
| FOFMOGFC_47 | 1.0 | 0.0 | 1.0 |
| FOFMOGFC_48 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_49 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_50 | 1.0 | 0.0 | 1.0 |
| FOFMOGFC_51 | 1.0 | 0.0 | 1.0 |
| FOFMOGFC_53 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_54 | 1.0 | 0.0 | 1.0 |
| FOFMOGFC_55 | 1.0 | 0.0 | 1.0 |
| FOFMOGFC_66 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_77 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_88 | 0.0 | 1.0 | 0.0 |
| FOFMOGFC_98 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FOFMOGFC_2 | 56411 | 63694 | True | Myoviridae | VOG6422, VOG5924, VOG4357, VOG0275, VOG0275, VOG9667 |
| FOFMOGFC_55 | 12776 | 42636 | False | Siphoviridae | VOG5267, VOG3477, VOG4910, VOG4633, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG10184, VOG0198, VOG1183, VOG8065, VOG7265, VOG4693, VOG7264, VOG4548, VOG7263 |
| FOFMOGFC_55 | 47291 | 81011 | False | Siphoviridae | VOG0275, VOG8294, VOG0641, VOG5267, VOG3477, VOG4910, VOG4633, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG10184, VOG0198, VOG1183, VOG8065, VOG7265, VOG4693, VOG7264, VOG4548, VOG7263 |
Phigaro v2.4.0 (Database: Jan. 2024 release)