Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OAGJIJFK_97 | 73888 | 73694 | CspA | 1.89e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OAGJIJFK_10 | 0.0 | 1.0 | 0.0 |
| OAGJIJFK_21 | 0.0 | 1.0 | 0.0 |
| OAGJIJFK_32 | 0.0 | 1.0 | 0.0 |
| OAGJIJFK_43 | 0.0 | 1.0 | 0.0 |
| OAGJIJFK_47 | 0.0 | 1.0 | 0.0 |
| OAGJIJFK_48 | 0.0 | 1.0 | 0.0 |
| OAGJIJFK_49 | 0.0 | 1.0 | 0.0 |
| OAGJIJFK_50 | 0.0 | 1.0 | 0.0 |
| OAGJIJFK_51 | 1.0 | 0.0 | 1.0 |
| OAGJIJFK_52 | 1.0 | 0.0 | 1.0 |
| OAGJIJFK_53 | 0.0 | 1.0 | 0.0 |
| OAGJIJFK_54 | 0.0 | 1.0 | 0.0 |
| OAGJIJFK_55 | 0.0 | 1.0 | 0.0 |
| OAGJIJFK_56 | 1.0 | 0.0 | 1.0 |
| OAGJIJFK_57 | 0.0 | 1.0 | 0.0 |
| OAGJIJFK_58 | 1.0 | 0.0 | 1.0 |
| OAGJIJFK_59 | 0.0 | 1.0 | 0.0 |
| OAGJIJFK_60 | 1.0 | 0.0 | 1.0 |
| OAGJIJFK_61 | 1.0 | 0.0 | 1.0 |
| OAGJIJFK_62 | 0.0 | 1.0 | 0.0 |
| OAGJIJFK_63 | 1.0 | 0.0 | 1.0 |
| OAGJIJFK_64 | 0.0 | 1.0 | 0.0 |
| OAGJIJFK_65 | 0.0 | 1.0 | 0.0 |
| OAGJIJFK_66 | 1.0 | 0.0 | 1.0 |
| OAGJIJFK_67 | 1.0 | 0.0 | 1.0 |
| OAGJIJFK_68 | 0.0 | 1.0 | 0.0 |
| OAGJIJFK_69 | 1.0 | 0.0 | 1.0 |
| OAGJIJFK_70 | 0.0 | 1.0 | 0.0 |
| OAGJIJFK_71 | 1.0 | 0.0 | 1.0 |
| OAGJIJFK_73 | 1.0 | 0.0 | 1.0 |
| OAGJIJFK_74 | 0.0 | 1.0 | 0.0 |
| OAGJIJFK_75 | 0.0 | 1.0 | 0.0 |
| OAGJIJFK_76 | 1.0 | 0.0 | 1.0 |
| OAGJIJFK_77 | 1.0 | 0.0 | 1.0 |
| OAGJIJFK_80 | 1.0 | 0.0 | 1.0 |
| OAGJIJFK_81 | 1.0 | 0.0 | 1.0 |
| OAGJIJFK_86 | 0.0 | 1.0 | 0.0 |
| OAGJIJFK_97 | 0.0 | 1.0 | 0.0 |
| OAGJIJFK_108 | 0.0 | 1.0 | 0.0 |
| OAGJIJFK_118 | 0.0 | 1.0 | 0.0 |
| OAGJIJFK_129 | 0.0 | 1.0 | 0.0 |
| OAGJIJFK_138 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OAGJIJFK_21 | 7049 | 19456 | False | Myoviridae / Siphoviridae / Podoviridae | VOG4693, VOG5341, VOG1183, VOG8065, VOG4567, VOG9507, VOG3679, VOG0189, VOG4566, VOG0226, VOG0514, VOG0283, VOG0535, VOG6495, VOG3478, VOG4552, VOG0010 |
| OAGJIJFK_51 | 2210 | 34061 | False | Siphoviridae | VOG0641, VOG5070, VOG4190, VOG6163, VOG4633, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG10914, VOG4564, VOG0720, VOG4544, VOG0796, VOG0198, VOG4690, VOG3307, VOG8772, VOG4010, VOG6495, VOG0686, VOG7265, VOG4693, VOG7264, VOG4548, VOG7263, VOG0322, VOG0321 |
| OAGJIJFK_52 | 1026 | 32106 | False | Siphoviridae | VOG0641, VOG0648, VOG5007, VOG4599, VOG0727, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG10914, VOG4564, VOG0720, VOG10227, VOG0796, VOG0198, VOG1183, VOG8065, VOG0327, VOG9667, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321 |
Phigaro v2.4.0 (Database: Jan. 2024 release)