Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DOALAIPI_39 | 34167 | 33973 | CspA | 1.53e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DOALAIPI_7 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_8 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_9 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_10 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_11 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_12 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_13 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_14 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_15 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_16 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_17 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_18 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_19 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_20 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_21 | 1.0 | 0.0 | 1.0 |
| DOALAIPI_22 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_23 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_24 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_25 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_26 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_27 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_28 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_29 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_30 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_31 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_32 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_33 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_34 | 1.0 | 0.0 | 1.0 |
| DOALAIPI_35 | 1.0 | 0.0 | 1.0 |
| DOALAIPI_36 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_37 | 1.0 | 0.0 | 1.0 |
| DOALAIPI_38 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_39 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_40 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_41 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_42 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_43 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_44 | 1.0 | 0.0 | 1.0 |
| DOALAIPI_45 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_47 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_49 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_50 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_52 | 1.0 | 0.0 | 1.0 |
| DOALAIPI_54 | 1.0 | 0.0 | 1.0 |
| DOALAIPI_55 | 1.0 | 0.0 | 1.0 |
| DOALAIPI_61 | 1.0 | 0.0 | 1.0 |
| DOALAIPI_72 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_83 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_93 | 0.0 | 1.0 | 0.0 |
| DOALAIPI_104 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DOALAIPI_21 | 2221 | 30942 | False | Siphoviridae | VOG0198, VOG0195, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG0725, VOG8438, VOG0641, VOG0703, VOG4824, VOG8387 |
| DOALAIPI_61 | 7534 | 10671 | False | Unknown | VOG5278, VOG0535, VOG0322, VOG0226 |
| DOALAIPI_61 | 18202 | 122072 | False | Siphoviridae | VOG6542, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG0704, VOG0725, VOG0817, VOG0801, VOG3462, VOG10972, VOG7145, VOG9997, VOG4856, VOG9998, VOG1637, VOG0054, VOG0275, VOG3304, VOG4602, VOG9667, VOG10195, VOG2228, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG5440, VOG8065, VOG1183, VOG10284, VOG0198, VOG0796, VOG10227, VOG0720, VOG4564, VOG5697, VOG7533, VOG10914, VOG1319, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG0727, VOG4599, VOG5007, VOG0648, VOG0641, VOG8294, VOG0275, VOG3304, VOG4602, VOG9667, VOG10195, VOG2228, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG5440, VOG8065, VOG1183, VOG10284, VOG0198, VOG0796, VOG10227, VOG0720, VOG4564, VOG5697, VOG7533, VOG10914, VOG1319, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG0727, VOG4599, VOG5007, VOG0648, VOG0641, VOG8294 |
| DOALAIPI_72 | 2624 | 25905 | False | Siphoviridae | VOG0198, VOG0796, VOG10227, VOG0691, VOG0692, VOG4555, VOG0695, VOG0696, VOG0697, VOG0698, VOG0701, VOG4545, VOG0801, VOG4619, VOG8438 |
Phigaro v2.4.0 (Database: Jan. 2024 release)