Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LPIKDLIH_173 | 10831 | 11025 | CspA | 1.06e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LPIKDLIH_10 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_21 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_31 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_38 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_45 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_52 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_59 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_65 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_74 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_83 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_84 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_90 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_100 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_111 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_122 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_133 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_135 | 1.0 | 0.0 | 1.0 |
| LPIKDLIH_136 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_137 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_138 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_139 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_140 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_141 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_142 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_143 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_144 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_145 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_146 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_147 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_148 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_149 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_150 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_151 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_152 | 1.0 | 0.0 | 1.0 |
| LPIKDLIH_153 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_154 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_155 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_156 | 1.0 | 0.0 | 1.0 |
| LPIKDLIH_157 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_158 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_159 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_160 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_161 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_162 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_163 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_164 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_165 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_166 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_167 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_168 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_169 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_170 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_171 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_172 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_173 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_174 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_175 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_176 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_177 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_178 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_179 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_180 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_181 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_182 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_183 | 1.0 | 0.0 | 1.0 |
| LPIKDLIH_184 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_185 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_186 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_188 | 1.0 | 0.0 | 1.0 |
| LPIKDLIH_189 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_190 | 1.0 | 0.0 | 1.0 |
| LPIKDLIH_191 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_192 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_193 | 1.0 | 0.0 | 1.0 |
| LPIKDLIH_195 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_196 | 1.0 | 0.0 | 1.0 |
| LPIKDLIH_197 | 1.0 | 0.0 | 1.0 |
| LPIKDLIH_198 | 1.0 | 0.0 | 1.0 |
| LPIKDLIH_199 | 1.0 | 0.0 | 1.0 |
| LPIKDLIH_200 | 1.0 | 0.0 | 1.0 |
| LPIKDLIH_201 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_202 | 1.0 | 0.0 | 1.0 |
| LPIKDLIH_203 | 1.0 | 0.0 | 1.0 |
| LPIKDLIH_206 | 0.0 | 1.0 | 0.0 |
| LPIKDLIH_216 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LPIKDLIH_135 | 2256 | 19866 | False | Siphoviridae | VOG4553, VOG0204, VOG0205, VOG0207, VOG0209, VOG0660, VOG0083, VOG0801, VOG3462, VOG10972, VOG0565, VOG9997, VOG4626 |
| LPIKDLIH_143 | 7136 | 16524 | False | Myoviridae | VOG7018, VOG9708, VOG0283, VOG0226, VOG4799, VOG0189, VOG5133, VOG4552, VOG4010, VOG4693, VOG4039, VOG3468, VOG0198, VOG3477 |
| LPIKDLIH_184 | 1770 | 22494 | False | Siphoviridae | VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG0704, VOG0725, VOG0817, VOG0801, VOG3462, VOG5070 |
Phigaro v2.4.0 (Database: Jan. 2024 release)