Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| POFJKPKM_23 | 49635 | 49441 | CspA | 4.17e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| POFJKPKM_11 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_14 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_15 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_16 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_17 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_18 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_19 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_20 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_21 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_22 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_23 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_24 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_25 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_26 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_27 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_28 | 1.0 | 0.0 | 1.0 |
| POFJKPKM_29 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_30 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_31 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_32 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_33 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_34 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_35 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_36 | 1.0 | 0.0 | 1.0 |
| POFJKPKM_37 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_39 | 1.0 | 0.0 | 1.0 |
| POFJKPKM_40 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_42 | 1.0 | 0.0 | 1.0 |
| POFJKPKM_43 | 1.0 | 0.0 | 1.0 |
| POFJKPKM_45 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_46 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_47 | 1.0 | 0.0 | 1.0 |
| POFJKPKM_55 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_66 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_74 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_83 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_92 | 0.0 | 1.0 | 0.0 |
| POFJKPKM_103 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| POFJKPKM_15 | 10333 | 12807 | False | Unknown | VOG0682, VOG9267, VOG9667, VOG7581 |
| POFJKPKM_15 | 25056 | 45454 | False | Siphoviridae | VOG6542, VOG0195, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG0725, VOG0817, VOG0518, VOG0801, VOG3462 |
| POFJKPKM_55 | 45698 | 82792 | False | Siphoviridae | VOG4615, VOG0703, VOG8917, VOG4663, VOG4887, VOG3462, VOG0801, VOG6163, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0195, VOG0198, VOG0686, VOG3307, VOG5317, VOG5280, VOG5562, VOG5998, VOG5278, VOG0275, VOG0195, VOG5878, VOG5878, VOG2228, VOG6450, VOG0753, VOG6495 |
Phigaro v2.4.0 (Database: Jan. 2024 release)