Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GDABHCCE_41 | 44988 | 45182 | CspA | 9.05e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GDABHCCE_63 | 17726 | 18700 | repUS67 | 981 / 1039 | 89.70 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GDABHCCE_11 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_21 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_32 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_34 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_35 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_36 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_37 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_38 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_39 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_40 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_41 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_42 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_43 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_44 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_45 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_46 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_47 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_48 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_49 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_50 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_51 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_52 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_53 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_54 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_55 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_56 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_57 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_58 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_59 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_60 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_61 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_62 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_63 | 1.0 | 0.0 | 1.0 |
| GDABHCCE_64 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_65 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_66 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_67 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_68 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_69 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_70 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_71 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_72 | 1.0 | 0.0 | 1.0 |
| GDABHCCE_73 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_74 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_75 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_76 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_77 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_78 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_79 | 1.0 | 0.0 | 1.0 |
| GDABHCCE_80 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_81 | 1.0 | 0.0 | 1.0 |
| GDABHCCE_82 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_83 | 1.0 | 0.0 | 1.0 |
| GDABHCCE_84 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_85 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_86 | 1.0 | 0.0 | 1.0 |
| GDABHCCE_88 | 1.0 | 0.0 | 1.0 |
| GDABHCCE_89 | 1.0 | 0.0 | 1.0 |
| GDABHCCE_90 | 1.0 | 0.0 | 1.0 |
| GDABHCCE_91 | 1.0 | 0.0 | 1.0 |
| GDABHCCE_92 | 1.0 | 0.0 | 1.0 |
| GDABHCCE_93 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_94 | 1.0 | 0.0 | 1.0 |
| GDABHCCE_95 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_96 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_98 | 1.0 | 0.0 | 1.0 |
| GDABHCCE_100 | 1.0 | 0.0 | 1.0 |
| GDABHCCE_101 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_102 | 1.0 | 0.0 | 1.0 |
| GDABHCCE_107 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_118 | 0.0 | 1.0 | 0.0 |
| GDABHCCE_129 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GDABHCCE_32 | 9447 | 34598 | False | Myoviridae | VOG0703, VOG8917, VOG3298, VOG6298, VOG10263, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4711, VOG10914, VOG4564, VOG0720, VOG4544, VOG0796, VOG4972, VOG0198 |
| GDABHCCE_32 | 39378 | 44692 | False | Siphoviridae | VOG0189, VOG4566, VOG0226, VOG0514, VOG0283, VOG0535, VOG9667 |
| GDABHCCE_63 | 22754 | 44147 | False | Siphoviridae | VOG5461, VOG5721, VOG6031, VOG6524, VOG6246, VOG6941, VOG6036, VOG7629, VOG7628, VOG5534, VOG4783, VOG10609, VOG8355, VOG0648, VOG0753, VOG0054 |
Phigaro v2.4.0 (Database: Jan. 2024 release)