Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JPKAGDCG_5 | 50286 | 52211 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| JPKAGDCG_20 | 11177 | 12142 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JPKAGDCG_20 | 11177 | 12142 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| JPKAGDCG_20 | 11177 | 12142 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| JPKAGDCG_20 | 11177 | 12142 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| JPKAGDCG_20 | 11177 | 12142 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| JPKAGDCG_5 | 50286 | 52211 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JPKAGDCG_20 | 11177 | 12139 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| JPKAGDCG_5 | 50289 | 52211 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JPKAGDCG_25 | 136265 | 137845 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JPKAGDCG_77 | 1303 | 1787 | repUS2 | 486 / 681 | 95.27 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JPKAGDCG_1 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_2 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_3 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_4 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_5 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_6 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_7 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_8 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_9 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_10 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_11 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_12 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_13 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_14 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_15 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_16 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_17 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_18 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_19 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_20 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_21 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_22 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_23 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_24 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_25 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_26 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_27 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_28 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_29 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_30 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_31 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_32 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_33 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_34 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_35 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_36 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_38 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_39 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_40 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_41 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_42 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_43 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_44 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_45 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_46 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_47 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_48 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_49 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_50 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_51 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_53 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_54 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_56 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_57 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_58 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_60 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_61 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_62 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_63 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_64 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_65 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_66 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_67 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_68 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_70 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_72 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_73 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_74 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_75 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_76 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_77 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_78 | 0.0 | 1.0 | 0.0 |
| JPKAGDCG_79 | 1.0 | 0.0 | 1.0 |
| JPKAGDCG_80 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JPKAGDCG_58 | 299745 | 312065 | False | Myoviridae | VOG3992, |
Phigaro v2.4.0 (Database: Jan. 2024 release)