Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JLAPNOCE_12 | 11189 | 13114 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JLAPNOCE_12 | 11189 | 13114 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JLAPNOCE_12 | 11192 | 13114 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JLAPNOCE_2 | 118783 | 117203 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JLAPNOCE_39 | 458 | 1038 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JLAPNOCE_1 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_2 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_3 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_4 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_5 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_6 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_7 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_8 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_9 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_10 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_11 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_12 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_13 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_14 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_15 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_16 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_17 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_18 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_19 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_20 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_21 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_22 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_23 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_24 | 1.0 | 0.0 | 1.0 |
| JLAPNOCE_25 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_26 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_27 | 1.0 | 0.0 | 1.0 |
| JLAPNOCE_28 | 1.0 | 0.0 | 1.0 |
| JLAPNOCE_29 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_30 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_31 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_32 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_33 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_34 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_35 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_36 | 1.0 | 0.0 | 1.0 |
| JLAPNOCE_37 | 1.0 | 0.0 | 1.0 |
| JLAPNOCE_39 | 1.0 | 0.0 | 1.0 |
| JLAPNOCE_40 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_41 | 1.0 | 0.0 | 1.0 |
| JLAPNOCE_42 | 1.0 | 0.0 | 1.0 |
| JLAPNOCE_43 | 1.0 | 0.0 | 1.0 |
| JLAPNOCE_44 | 1.0 | 0.0 | 1.0 |
| JLAPNOCE_45 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_46 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_47 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_48 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_49 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_50 | 1.0 | 0.0 | 1.0 |
| JLAPNOCE_51 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_52 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_53 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_55 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_56 | 1.0 | 0.0 | 1.0 |
| JLAPNOCE_57 | 1.0 | 0.0 | 1.0 |
| JLAPNOCE_58 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_59 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_60 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_61 | 1.0 | 0.0 | 1.0 |
| JLAPNOCE_62 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_63 | 1.0 | 0.0 | 1.0 |
| JLAPNOCE_64 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_65 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_66 | 1.0 | 0.0 | 1.0 |
| JLAPNOCE_67 | 1.0 | 0.0 | 1.0 |
| JLAPNOCE_68 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_69 | 1.0 | 0.0 | 1.0 |
| JLAPNOCE_70 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_71 | 1.0 | 0.0 | 1.0 |
| JLAPNOCE_72 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_73 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_74 | 1.0 | 0.0 | 1.0 |
| JLAPNOCE_75 | 1.0 | 0.0 | 1.0 |
| JLAPNOCE_76 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_77 | 1.0 | 0.0 | 1.0 |
| JLAPNOCE_78 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_79 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_80 | 1.0 | 0.0 | 1.0 |
| JLAPNOCE_81 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_82 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_83 | 1.0 | 0.0 | 1.0 |
| JLAPNOCE_84 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_85 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_86 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_87 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_88 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_89 | 0.0 | 1.0 | 0.0 |
| JLAPNOCE_90 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JLAPNOCE_8 | 114129 | 128372 | False | Unknown | VOG4572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)