Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JIGKMDDE_11 | 112120 | 114094 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JIGKMDDE_11 | 112120 | 114045 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| JIGKMDDE_48 | 197067 | 197739 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.55 | 84.02 | M17808 |
| JIGKMDDE_10 | 52663 | 53613 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| JIGKMDDE_10 | 52663 | 53613 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| JIGKMDDE_10 | 52663 | 53613 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| JIGKMDDE_10 | 52663 | 53613 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JIGKMDDE_11 | 112123 | 114045 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| JIGKMDDE_48 | 197067 | 197738 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | PARTIALX | 99.11 | 84.21 | WP_002682030.1 |
| JIGKMDDE_10 | 52661 | 53614 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JIGKMDDE_52 | 119905 | 121485 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JIGKMDDE_1 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_2 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_3 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_4 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_5 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_6 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_7 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_8 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_9 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_10 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_11 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_12 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_13 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_14 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_15 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_16 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_17 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_18 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_19 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_20 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_21 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_22 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_23 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_24 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_25 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_26 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_27 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_28 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_29 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_30 | 1.0 | 0.0 | 1.0 |
| JIGKMDDE_31 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_32 | 1.0 | 0.0 | 1.0 |
| JIGKMDDE_33 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_34 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_36 | 1.0 | 0.0 | 1.0 |
| JIGKMDDE_37 | 1.0 | 0.0 | 1.0 |
| JIGKMDDE_38 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_39 | 1.0 | 0.0 | 1.0 |
| JIGKMDDE_40 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_41 | 1.0 | 0.0 | 1.0 |
| JIGKMDDE_42 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_43 | 1.0 | 0.0 | 1.0 |
| JIGKMDDE_44 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_45 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_46 | 1.0 | 0.0 | 1.0 |
| JIGKMDDE_47 | 1.0 | 0.0 | 1.0 |
| JIGKMDDE_48 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_49 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_50 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_51 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_52 | 0.0 | 1.0 | 0.0 |
| JIGKMDDE_53 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)