Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 2 | 4.47 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DMIHELNL_111 | 401549 | 403523 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| DMIHELNL_204 | 197066 | 197866 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| DMIHELNL_47 | 177 | 374 | rsmA | ARO:3005069 | rsmA | 90.91 | 106.56 | AF061757.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DMIHELNL_111 | 401597 | 403522 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| DMIHELNL_204 | 197066 | 197866 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| DMIHELNL_99 | 125052 | 126002 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| DMIHELNL_99 | 125052 | 126002 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| DMIHELNL_99 | 125052 | 126002 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| DMIHELNL_99 | 125052 | 126002 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DMIHELNL_111 | 401597 | 403519 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| DMIHELNL_204 | 197066 | 197863 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| DMIHELNL_99 | 125051 | 126004 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DMIHELNL_11 | 62991 | 61411 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
| DMIHELNL_47 | 177 | 371 | CsrA | 5.33e-36 | small RNA-binding protein involved in the regulation of a wide range of cellular processes. | 96.92 | 100.00 | AAF93716 |
| DMIHELNL_47 | 177 | 347 | csrA | 1.23e-29 | post-transcriptional regulator | 94.74 | 93.44 | AAA71919 |
| DMIHELNL_47 | 177 | 371 | RsmA | 5.79e-29 | carbon storage regulator homolog | 84.61 | 104.92 | AAA74502 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DMIHELNL_174 | 380 | 1573 | rep33 | 1203 / 1194 | 88.11 | HE613570 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DMIHELNL_1 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_2 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_3 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_4 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_5 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_6 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_8 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_9 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_10 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_11 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_12 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_13 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_14 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_15 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_16 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_17 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_18 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_20 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_21 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_22 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_23 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_24 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_26 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_28 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_29 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_30 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_31 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_32 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_33 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_35 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_36 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_37 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_38 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_39 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_40 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_42 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_43 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_44 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_45 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_47 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_51 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_52 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_53 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_54 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_55 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_56 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_57 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_58 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_59 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_60 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_61 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_62 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_63 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_65 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_66 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_67 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_68 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_69 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_71 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_72 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_73 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_75 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_76 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_77 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_79 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_81 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_82 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_83 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_85 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_87 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_88 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_89 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_90 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_91 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_92 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_93 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_94 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_95 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_96 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_97 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_98 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_99 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_100 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_101 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_104 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_105 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_106 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_107 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_108 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_109 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_110 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_111 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_112 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_113 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_115 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_116 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_117 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_118 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_119 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_121 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_122 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_123 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_124 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_125 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_126 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_127 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_128 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_129 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_130 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_131 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_132 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_133 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_134 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_135 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_136 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_137 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_138 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_139 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_140 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_141 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_142 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_143 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_144 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_145 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_146 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_147 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_148 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_149 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_150 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_151 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_152 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_153 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_154 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_155 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_156 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_157 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_158 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_159 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_160 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_161 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_162 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_163 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_164 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_166 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_167 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_168 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_169 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_170 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_171 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_172 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_173 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_174 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_175 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_176 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_177 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_178 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_179 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_180 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_181 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_182 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_183 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_184 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_185 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_187 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_188 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_190 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_191 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_192 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_193 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_194 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_196 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_197 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_198 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_199 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_200 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_202 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_203 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_204 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_205 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_206 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_207 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_208 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_209 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_210 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_211 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_212 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_213 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_214 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_215 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_216 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_217 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_219 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_221 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_222 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_223 | 0.0 | 1.0 | 0.0 |
| DMIHELNL_225 | 1.0 | 0.0 | 1.0 |
| DMIHELNL_226 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DMIHELNL_152 | 867 | 21960 | False | Siphoviridae | VOG4603, |
| DMIHELNL_153 | 697 | 20395 | False | Siphoviridae | VOG4603, |
Phigaro v2.4.0 (Database: Jan. 2024 release)