Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PMPJFOEO_14 | 330294 | 332219 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PMPJFOEO_14 | 330294 | 332219 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PMPJFOEO_14 | 330297 | 332219 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PMPJFOEO_47 | 146153 | 144573 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PMPJFOEO_1 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_2 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_3 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_4 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_5 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_6 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_7 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_8 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_9 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_10 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_11 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_12 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_13 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_14 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_15 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_16 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_17 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_18 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_19 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_20 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_21 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_22 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_23 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_24 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_25 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_26 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_27 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_28 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_30 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_31 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_32 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_33 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_34 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_35 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_36 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_37 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_38 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_39 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_40 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_41 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_42 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_43 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_44 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_45 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_46 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_47 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_48 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_49 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_50 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_51 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_52 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_53 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_54 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_55 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_56 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_57 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_58 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_59 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_60 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_61 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_62 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_63 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_64 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_65 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_66 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_67 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_68 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_69 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_70 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_71 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_72 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_73 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_74 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_75 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_76 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_77 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_80 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_81 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_82 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_84 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_85 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_86 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_87 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_88 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_89 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_90 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_91 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_92 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_93 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_94 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_95 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_96 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_98 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_99 | 1.0 | 0.0 | 1.0 |
| PMPJFOEO_100 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_101 | 0.0 | 1.0 | 0.0 |
| PMPJFOEO_102 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PMPJFOEO_47 | 81286 | 85291 | False | Unknown | VOG8253, |
Phigaro v2.4.0 (Database: Jan. 2024 release)