Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OPHIDCGH_8 | 136834 | 138759 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OPHIDCGH_8 | 136834 | 138759 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OPHIDCGH_8 | 136834 | 138756 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OPHIDCGH_2 | 118783 | 117203 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OPHIDCGH_67 | 1570 | 2249 | repUS2 | 682 / 681 | 99.27 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OPHIDCGH_1 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_2 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_3 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_4 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_5 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_6 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_7 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_8 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_9 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_10 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_11 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_12 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_13 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_14 | 1.0 | 0.0 | 1.0 |
| OPHIDCGH_15 | 1.0 | 0.0 | 1.0 |
| OPHIDCGH_16 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_17 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_18 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_19 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_20 | 1.0 | 0.0 | 1.0 |
| OPHIDCGH_21 | 1.0 | 0.0 | 1.0 |
| OPHIDCGH_22 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_23 | 1.0 | 0.0 | 1.0 |
| OPHIDCGH_24 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_25 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_26 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_28 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_29 | 1.0 | 0.0 | 1.0 |
| OPHIDCGH_30 | 1.0 | 0.0 | 1.0 |
| OPHIDCGH_31 | 1.0 | 0.0 | 1.0 |
| OPHIDCGH_32 | 1.0 | 0.0 | 1.0 |
| OPHIDCGH_33 | 1.0 | 0.0 | 1.0 |
| OPHIDCGH_34 | 1.0 | 0.0 | 1.0 |
| OPHIDCGH_35 | 1.0 | 0.0 | 1.0 |
| OPHIDCGH_36 | 1.0 | 0.0 | 1.0 |
| OPHIDCGH_37 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_38 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_39 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_40 | 1.0 | 0.0 | 1.0 |
| OPHIDCGH_42 | 1.0 | 0.0 | 1.0 |
| OPHIDCGH_43 | 1.0 | 0.0 | 1.0 |
| OPHIDCGH_44 | 1.0 | 0.0 | 1.0 |
| OPHIDCGH_45 | 1.0 | 0.0 | 1.0 |
| OPHIDCGH_46 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_47 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_48 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_49 | 1.0 | 0.0 | 1.0 |
| OPHIDCGH_50 | 1.0 | 0.0 | 1.0 |
| OPHIDCGH_51 | 1.0 | 0.0 | 1.0 |
| OPHIDCGH_52 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_53 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_54 | 1.0 | 0.0 | 1.0 |
| OPHIDCGH_55 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_56 | 1.0 | 0.0 | 1.0 |
| OPHIDCGH_58 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_59 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_60 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_61 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_63 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_64 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_65 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_66 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_67 | 1.0 | 0.0 | 1.0 |
| OPHIDCGH_68 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_69 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_70 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_71 | 1.0 | 0.0 | 1.0 |
| OPHIDCGH_72 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_73 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_74 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_75 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_76 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_77 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_78 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_79 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_80 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_81 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_82 | 0.0 | 1.0 | 0.0 |
| OPHIDCGH_83 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OPHIDCGH_72 | 194765 | 209008 | False | Unknown | VOG3992, |
Phigaro v2.4.0 (Database: Jan. 2024 release)