Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NPMJDELF_3 | 11189 | 13114 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NPMJDELF_3 | 11189 | 13114 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NPMJDELF_3 | 11192 | 13114 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NPMJDELF_65 | 161525 | 163105 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NPMJDELF_21 | 136 | 815 | repUS2 | 682 / 681 | 99.27 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NPMJDELF_1 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_2 | 1.0 | 0.0 | 1.0 |
| NPMJDELF_3 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_4 | 1.0 | 0.0 | 1.0 |
| NPMJDELF_5 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_6 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_7 | 1.0 | 0.0 | 1.0 |
| NPMJDELF_8 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_9 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_10 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_11 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_12 | 1.0 | 0.0 | 1.0 |
| NPMJDELF_13 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_14 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_15 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_16 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_17 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_18 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_19 | 1.0 | 0.0 | 1.0 |
| NPMJDELF_20 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_21 | 1.0 | 0.0 | 1.0 |
| NPMJDELF_22 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_23 | 1.0 | 0.0 | 1.0 |
| NPMJDELF_24 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_25 | 1.0 | 0.0 | 1.0 |
| NPMJDELF_26 | 1.0 | 0.0 | 1.0 |
| NPMJDELF_27 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_28 | 1.0 | 0.0 | 1.0 |
| NPMJDELF_30 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_31 | 1.0 | 0.0 | 1.0 |
| NPMJDELF_32 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_33 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_34 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_35 | 1.0 | 0.0 | 1.0 |
| NPMJDELF_36 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_37 | 1.0 | 0.0 | 1.0 |
| NPMJDELF_38 | 1.0 | 0.0 | 1.0 |
| NPMJDELF_39 | 1.0 | 0.0 | 1.0 |
| NPMJDELF_40 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_42 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_43 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_44 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_45 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_46 | 1.0 | 0.0 | 1.0 |
| NPMJDELF_47 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_48 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_49 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_50 | 1.0 | 0.0 | 1.0 |
| NPMJDELF_51 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_52 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_53 | 1.0 | 0.0 | 1.0 |
| NPMJDELF_54 | 1.0 | 0.0 | 1.0 |
| NPMJDELF_55 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_56 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_57 | 1.0 | 0.0 | 1.0 |
| NPMJDELF_58 | 1.0 | 0.0 | 1.0 |
| NPMJDELF_59 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_60 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_61 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_62 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_63 | 1.0 | 0.0 | 1.0 |
| NPMJDELF_64 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_65 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_66 | 1.0 | 0.0 | 1.0 |
| NPMJDELF_67 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_68 | 1.0 | 0.0 | 1.0 |
| NPMJDELF_69 | 0.0 | 1.0 | 0.0 |
| NPMJDELF_70 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NPMJDELF_59 | 113663 | 127906 | False | Unknown | VOG4572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)