Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DDBAJGFM_172 | 166260 | 167225 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DDBAJGFM_172 | 166260 | 167225 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| DDBAJGFM_172 | 166260 | 167225 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| DDBAJGFM_172 | 166260 | 167225 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| DDBAJGFM_172 | 166260 | 167225 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DDBAJGFM_172 | 166260 | 167222 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| DDBAJGFM_54 | 2518 | 3471 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DDBAJGFM_17 | 132734 | 131154 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DDBAJGFM_25 | 472 | 1052 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DDBAJGFM_1 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_2 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_3 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_4 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_5 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_6 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_7 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_8 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_9 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_10 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_11 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_12 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_13 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_14 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_15 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_16 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_17 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_18 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_19 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_20 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_21 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_22 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_23 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_24 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_25 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_26 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_27 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_28 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_29 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_30 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_31 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_32 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_33 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_34 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_35 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_36 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_37 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_38 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_39 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_40 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_41 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_42 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_43 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_44 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_45 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_46 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_47 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_48 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_49 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_50 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_51 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_52 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_54 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_55 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_56 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_57 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_58 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_59 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_60 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_61 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_62 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_63 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_64 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_65 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_66 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_67 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_68 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_69 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_70 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_71 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_72 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_73 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_74 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_75 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_76 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_77 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_78 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_79 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_80 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_81 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_82 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_83 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_84 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_85 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_86 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_87 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_88 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_89 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_90 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_91 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_92 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_93 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_94 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_95 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_96 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_97 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_98 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_99 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_100 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_101 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_102 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_103 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_104 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_105 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_106 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_107 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_108 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_109 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_110 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_111 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_112 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_113 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_114 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_115 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_116 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_117 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_118 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_119 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_120 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_121 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_122 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_123 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_124 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_125 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_126 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_127 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_128 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_129 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_130 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_131 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_132 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_133 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_134 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_135 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_136 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_137 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_138 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_139 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_140 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_141 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_142 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_143 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_144 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_145 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_146 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_147 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_148 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_149 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_150 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_151 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_152 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_153 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_154 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_155 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_156 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_157 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_158 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_159 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_160 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_161 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_162 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_163 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_164 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_165 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_166 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_167 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_168 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_169 | 0.0 | 1.0 | 0.0 |
| DDBAJGFM_170 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_171 | 1.0 | 0.0 | 1.0 |
| DDBAJGFM_172 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DDBAJGFM_17 | 6214 | 20698 | False | Myoviridae | VOG4572, |
| DDBAJGFM_24 | 109094 | 117088 | True | Siphoviridae | VOG2703, |
| DDBAJGFM_37 | 180606 | 184904 | False | Siphoviridae | VOG5278, |
| DDBAJGFM_136 | 198540 | 210201 | False | Myoviridae | VOG9471, |
Phigaro v2.4.0 (Database: Jan. 2024 release)