Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PKBOBCMF_45 | 197066 | 197866 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| PKBOBCMF_23 | 111349 | 113323 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PKBOBCMF_23 | 111349 | 113274 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| PKBOBCMF_45 | 197066 | 197866 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| PKBOBCMF_25 | 8755 | 9705 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| PKBOBCMF_25 | 8755 | 9705 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| PKBOBCMF_25 | 8755 | 9705 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| PKBOBCMF_25 | 8755 | 9705 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PKBOBCMF_23 | 111352 | 113274 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| PKBOBCMF_45 | 197066 | 197863 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| PKBOBCMF_25 | 8754 | 9707 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PKBOBCMF_78 | 62875 | 61295 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PKBOBCMF_1 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_2 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_3 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_4 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_5 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_6 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_7 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_8 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_9 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_10 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_11 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_12 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_13 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_14 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_15 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_16 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_17 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_18 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_19 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_20 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_21 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_22 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_23 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_24 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_25 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_26 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_27 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_28 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_29 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_30 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_31 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_32 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_33 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_34 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_35 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_36 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_37 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_38 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_39 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_40 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_41 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_42 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_43 | 1.0 | 0.0 | 1.0 |
| PKBOBCMF_44 | 1.0 | 0.0 | 1.0 |
| PKBOBCMF_45 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_48 | 1.0 | 0.0 | 1.0 |
| PKBOBCMF_49 | 1.0 | 0.0 | 1.0 |
| PKBOBCMF_50 | 1.0 | 0.0 | 1.0 |
| PKBOBCMF_51 | 1.0 | 0.0 | 1.0 |
| PKBOBCMF_52 | 1.0 | 0.0 | 1.0 |
| PKBOBCMF_53 | 1.0 | 0.0 | 1.0 |
| PKBOBCMF_54 | 1.0 | 0.0 | 1.0 |
| PKBOBCMF_55 | 1.0 | 0.0 | 1.0 |
| PKBOBCMF_56 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_58 | 1.0 | 0.0 | 1.0 |
| PKBOBCMF_60 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_61 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_63 | 1.0 | 0.0 | 1.0 |
| PKBOBCMF_65 | 1.0 | 0.0 | 1.0 |
| PKBOBCMF_66 | 1.0 | 0.0 | 1.0 |
| PKBOBCMF_67 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_69 | 1.0 | 0.0 | 1.0 |
| PKBOBCMF_70 | 1.0 | 0.0 | 1.0 |
| PKBOBCMF_72 | 1.0 | 0.0 | 1.0 |
| PKBOBCMF_73 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_74 | 1.0 | 0.0 | 1.0 |
| PKBOBCMF_75 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_76 | 1.0 | 0.0 | 1.0 |
| PKBOBCMF_77 | 1.0 | 0.0 | 1.0 |
| PKBOBCMF_78 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_79 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_81 | 1.0 | 0.0 | 1.0 |
| PKBOBCMF_84 | 1.0 | 0.0 | 1.0 |
| PKBOBCMF_85 | 1.0 | 0.0 | 1.0 |
| PKBOBCMF_86 | 1.0 | 0.0 | 1.0 |
| PKBOBCMF_87 | 0.0 | 1.0 | 0.0 |
| PKBOBCMF_88 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PKBOBCMF_33 | 795 | 24052 | False | Siphoviridae | VOG4603, |
| PKBOBCMF_36 | 510 | 20400 | False | Siphoviridae | VOG4603, |
Phigaro v2.4.0 (Database: Jan. 2024 release)