Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EOCOOGFF_66 | 197066 | 197866 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| EOCOOGFF_11 | 112662 | 114636 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EOCOOGFF_11 | 112662 | 114587 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| EOCOOGFF_66 | 197066 | 197866 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| EOCOOGFF_71 | 52663 | 53613 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| EOCOOGFF_71 | 52663 | 53613 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| EOCOOGFF_71 | 52663 | 53613 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| EOCOOGFF_71 | 52663 | 53613 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EOCOOGFF_11 | 112665 | 114587 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| EOCOOGFF_66 | 197066 | 197863 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| EOCOOGFF_71 | 52661 | 53614 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EOCOOGFF_70 | 120012 | 121592 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EOCOOGFF_1 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_2 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_3 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_4 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_5 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_6 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_7 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_8 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_9 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_10 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_11 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_12 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_13 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_14 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_15 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_16 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_17 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_18 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_19 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_20 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_21 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_22 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_23 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_24 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_25 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_26 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_27 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_28 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_29 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_30 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_31 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_32 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_33 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_35 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_36 | 1.0 | 0.0 | 1.0 |
| EOCOOGFF_37 | 1.0 | 0.0 | 1.0 |
| EOCOOGFF_39 | 1.0 | 0.0 | 1.0 |
| EOCOOGFF_40 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_41 | 1.0 | 0.0 | 1.0 |
| EOCOOGFF_44 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_46 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_48 | 1.0 | 0.0 | 1.0 |
| EOCOOGFF_49 | 1.0 | 0.0 | 1.0 |
| EOCOOGFF_50 | 1.0 | 0.0 | 1.0 |
| EOCOOGFF_52 | 1.0 | 0.0 | 1.0 |
| EOCOOGFF_53 | 1.0 | 0.0 | 1.0 |
| EOCOOGFF_55 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_58 | 1.0 | 0.0 | 1.0 |
| EOCOOGFF_59 | 1.0 | 0.0 | 1.0 |
| EOCOOGFF_60 | 1.0 | 0.0 | 1.0 |
| EOCOOGFF_61 | 1.0 | 0.0 | 1.0 |
| EOCOOGFF_63 | 1.0 | 0.0 | 1.0 |
| EOCOOGFF_64 | 1.0 | 0.0 | 1.0 |
| EOCOOGFF_65 | 1.0 | 0.0 | 1.0 |
| EOCOOGFF_66 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_67 | 1.0 | 0.0 | 1.0 |
| EOCOOGFF_68 | 1.0 | 0.0 | 1.0 |
| EOCOOGFF_69 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_70 | 0.0 | 1.0 | 0.0 |
| EOCOOGFF_71 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EOCOOGFF_24 | 2631 | 32083 | False | Siphoviridae | VOG6214, |
| EOCOOGFF_28 | 867 | 21960 | False | Siphoviridae | VOG4603, |
Phigaro v2.4.0 (Database: Jan. 2024 release)