Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JNAGKMGF_30 | 1854 | 3779 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JNAGKMGF_30 | 1854 | 3779 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| JNAGKMGF_55 | 667 | 1617 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| JNAGKMGF_55 | 667 | 1617 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| JNAGKMGF_55 | 667 | 1617 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| JNAGKMGF_55 | 667 | 1617 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JNAGKMGF_30 | 1854 | 3776 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| JNAGKMGF_55 | 665 | 1618 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JNAGKMGF_3 | 27614 | 26034 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JNAGKMGF_58 | 1597 | 2276 | repUS2 | 682 / 681 | 99.27 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JNAGKMGF_1 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_2 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_3 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_4 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_5 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_6 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_7 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_8 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_9 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_10 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_11 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_12 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_13 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_14 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_15 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_16 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_17 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_18 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_19 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_20 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_21 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_22 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_23 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_24 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_25 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_26 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_27 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_28 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_29 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_30 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_31 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_32 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_33 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_34 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_35 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_36 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_37 | 1.0 | 0.0 | 1.0 |
| JNAGKMGF_38 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_39 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_40 | 1.0 | 0.0 | 1.0 |
| JNAGKMGF_41 | 1.0 | 0.0 | 1.0 |
| JNAGKMGF_42 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_43 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_44 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_45 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_46 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_47 | 1.0 | 0.0 | 1.0 |
| JNAGKMGF_48 | 1.0 | 0.0 | 1.0 |
| JNAGKMGF_49 | 1.0 | 0.0 | 1.0 |
| JNAGKMGF_50 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_52 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_53 | 1.0 | 0.0 | 1.0 |
| JNAGKMGF_54 | 1.0 | 0.0 | 1.0 |
| JNAGKMGF_55 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_56 | 1.0 | 0.0 | 1.0 |
| JNAGKMGF_57 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_58 | 1.0 | 0.0 | 1.0 |
| JNAGKMGF_59 | 1.0 | 0.0 | 1.0 |
| JNAGKMGF_61 | 1.0 | 0.0 | 1.0 |
| JNAGKMGF_62 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_64 | 1.0 | 0.0 | 1.0 |
| JNAGKMGF_65 | 1.0 | 0.0 | 1.0 |
| JNAGKMGF_66 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_67 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_68 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_69 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_70 | 1.0 | 0.0 | 1.0 |
| JNAGKMGF_71 | 1.0 | 0.0 | 1.0 |
| JNAGKMGF_72 | 1.0 | 0.0 | 1.0 |
| JNAGKMGF_73 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_74 | 0.0 | 1.0 | 0.0 |
| JNAGKMGF_75 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JNAGKMGF_11 | 541693 | 545950 | False | Myoviridae | VOG4552, |
Phigaro v2.4.0 (Database: Jan. 2024 release)