Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PFOAHMEE_76 | 1876 | 3801 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PFOAHMEE_76 | 1876 | 3801 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| PFOAHMEE_128 | 220762 | 221712 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| PFOAHMEE_128 | 220762 | 221712 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| PFOAHMEE_128 | 220762 | 221712 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| PFOAHMEE_128 | 220762 | 221712 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PFOAHMEE_76 | 1876 | 3798 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| PFOAHMEE_128 | 220761 | 221714 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PFOAHMEE_65 | 158552 | 160132 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PFOAHMEE_82 | 721 | 1400 | repUS2 | 682 / 681 | 99.27 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PFOAHMEE_1 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_2 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_3 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_4 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_5 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_6 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_7 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_8 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_9 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_10 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_11 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_12 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_13 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_14 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_15 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_16 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_17 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_18 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_19 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_20 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_21 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_22 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_23 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_24 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_25 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_26 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_27 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_28 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_29 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_30 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_31 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_32 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_33 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_34 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_35 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_36 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_37 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_38 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_40 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_41 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_42 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_43 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_44 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_45 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_46 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_47 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_48 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_49 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_50 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_51 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_53 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_54 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_55 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_56 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_57 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_58 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_59 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_60 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_61 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_62 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_63 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_64 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_65 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_66 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_67 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_68 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_69 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_70 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_71 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_72 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_73 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_74 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_75 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_76 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_77 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_78 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_79 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_80 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_81 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_82 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_83 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_84 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_85 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_86 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_87 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_88 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_89 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_90 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_91 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_92 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_93 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_94 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_95 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_96 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_97 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_98 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_99 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_100 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_101 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_102 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_103 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_104 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_105 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_106 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_107 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_108 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_109 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_110 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_111 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_112 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_113 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_114 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_115 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_116 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_117 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_118 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_119 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_120 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_121 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_122 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_123 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_124 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_126 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_127 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_128 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_129 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_130 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_131 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_132 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_133 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_134 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_135 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_136 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_137 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_138 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_139 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_140 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_141 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_142 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_143 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_144 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_145 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_146 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_147 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_148 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_149 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_150 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_151 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_152 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_153 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_154 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_156 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_157 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_158 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_159 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_160 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_161 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_162 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_163 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_164 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_165 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_166 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_167 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_168 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_170 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_171 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_172 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_173 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_174 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_175 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_176 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_177 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_178 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_180 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_181 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_182 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_183 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_184 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_185 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_186 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_187 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_188 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_189 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_190 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_191 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_192 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_193 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_194 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_195 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_196 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_197 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_198 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_199 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_200 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_201 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_202 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_203 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_204 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_205 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_206 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_207 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_208 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_209 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_211 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_212 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_213 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_214 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_215 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_216 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_217 | 0.0 | 1.0 | 0.0 |
| PFOAHMEE_218 | 1.0 | 0.0 | 1.0 |
| PFOAHMEE_219 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PFOAHMEE_74 | 220695 | 224952 | False | Myoviridae | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)