Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PBLENHLM_14 | 27907 | 29832 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PBLENHLM_14 | 27907 | 29832 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| PBLENHLM_46 | 156958 | 157908 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| PBLENHLM_46 | 156958 | 157908 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| PBLENHLM_46 | 156958 | 157908 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| PBLENHLM_46 | 156958 | 157908 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PBLENHLM_14 | 27910 | 29832 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| PBLENHLM_46 | 156956 | 157909 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PBLENHLM_101 | 95294 | 93714 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PBLENHLM_40 | 394 | 1073 | repUS2 | 682 / 681 | 99.27 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PBLENHLM_1 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_2 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_3 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_4 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_5 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_6 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_7 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_9 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_10 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_11 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_12 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_13 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_14 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_15 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_16 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_17 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_18 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_19 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_20 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_21 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_22 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_23 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_24 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_25 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_26 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_27 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_28 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_29 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_30 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_31 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_32 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_33 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_35 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_36 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_37 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_38 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_39 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_40 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_41 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_42 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_43 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_44 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_45 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_46 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_47 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_48 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_50 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_51 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_52 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_53 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_54 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_55 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_56 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_57 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_58 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_59 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_60 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_61 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_64 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_65 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_67 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_68 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_69 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_70 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_71 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_72 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_73 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_74 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_76 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_77 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_78 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_79 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_80 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_81 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_82 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_83 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_84 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_85 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_86 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_87 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_88 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_89 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_90 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_91 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_92 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_93 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_95 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_96 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_97 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_98 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_99 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_100 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_101 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_102 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_103 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_104 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_105 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_106 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_107 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_108 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_109 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_110 | 1.0 | 0.0 | 1.0 |
| PBLENHLM_111 | 0.0 | 1.0 | 0.0 |
| PBLENHLM_112 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PBLENHLM_23 | 629541 | 633798 | False | Myoviridae | VOG4552, |
Phigaro v2.4.0 (Database: Jan. 2024 release)