Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KFHFHDEH_24 | 8232 | 9197 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| KFHFHDEH_29 | 2773 | 4746 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KFHFHDEH_24 | 8232 | 9197 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| KFHFHDEH_24 | 8232 | 9197 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| KFHFHDEH_24 | 8232 | 9197 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| KFHFHDEH_24 | 8232 | 9197 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| KFHFHDEH_29 | 2821 | 4746 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| KFHFHDEH_29 | 126 | 1343 | mef(A) | Erythromycin, Azithromycin | 95.07 | 100.00 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KFHFHDEH_24 | 8235 | 9197 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| KFHFHDEH_29 | 2821 | 4743 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| KFHFHDEH_29 | 126 | 1346 | mef(A) | macrolide efflux MFS transporter Mef(A) | INTERNAL_STOP | 98.53 | 99.75 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KFHFHDEH_22 | 633934 | 635514 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KFHFHDEH_1 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_2 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_3 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_4 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_5 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_6 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_7 | 1.0 | 0.0 | 1.0 |
| KFHFHDEH_8 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_9 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_10 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_11 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_12 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_13 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_14 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_15 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_16 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_17 | 1.0 | 0.0 | 1.0 |
| KFHFHDEH_18 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_19 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_20 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_21 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_22 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_23 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_24 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_25 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_26 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_27 | 1.0 | 0.0 | 1.0 |
| KFHFHDEH_28 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_29 | 1.0 | 0.0 | 1.0 |
| KFHFHDEH_30 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_32 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_33 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_34 | 1.0 | 0.0 | 1.0 |
| KFHFHDEH_35 | 1.0 | 0.0 | 1.0 |
| KFHFHDEH_36 | 1.0 | 0.0 | 1.0 |
| KFHFHDEH_38 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_39 | 1.0 | 0.0 | 1.0 |
| KFHFHDEH_40 | 1.0 | 0.0 | 1.0 |
| KFHFHDEH_41 | 1.0 | 0.0 | 1.0 |
| KFHFHDEH_42 | 1.0 | 0.0 | 1.0 |
| KFHFHDEH_43 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_44 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_45 | 1.0 | 0.0 | 1.0 |
| KFHFHDEH_46 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_47 | 1.0 | 0.0 | 1.0 |
| KFHFHDEH_48 | 1.0 | 0.0 | 1.0 |
| KFHFHDEH_49 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_50 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_51 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_52 | 0.0 | 1.0 | 0.0 |
| KFHFHDEH_53 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KFHFHDEH_11 | 672869 | 682331 | False | Siphoviridae | VOG0275, |
| KFHFHDEH_11 | 928833 | 933053 | False | Myoviridae | VOG4552, |
| KFHFHDEH_22 | 169559 | 180684 | False | Myoviridae | VOG1837, |
Phigaro v2.4.0 (Database: Jan. 2024 release)