Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KCOLDIBA_103 | 9044 | 10969 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| KCOLDIBA_100 | 8232 | 9197 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| KCOLDIBA_167 | 428 | 1087 | Clostridium butyricum catB | ARO:3002674 | Cbut_catB | 99.54 | 100.00 | M93113.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KCOLDIBA_100 | 8232 | 9197 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| KCOLDIBA_100 | 8232 | 9197 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| KCOLDIBA_100 | 8232 | 9197 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| KCOLDIBA_100 | 8232 | 9197 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| KCOLDIBA_103 | 9044 | 10969 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| KCOLDIBA_167 | 428 | 1087 | catB | Chloramphenicol | 99.09 | 100.00 | M93113 |
| KCOLDIBA_103 | 12447 | 13664 | mef(A) | Erythromycin, Azithromycin | 95.07 | 100.00 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KCOLDIBA_100 | 8235 | 9197 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| KCOLDIBA_167 | 428 | 1084 | catA15 | type A-15 chloramphenicol acetyltransferase CatA15 | BLASTX | 99.54 | 100.00 | WP_063843219.1 |
| KCOLDIBA_103 | 9047 | 10969 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| KCOLDIBA_103 | 12444 | 13664 | mef(A) | macrolide efflux MFS transporter Mef(A) | INTERNAL_STOP | 98.53 | 99.75 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KCOLDIBA_104 | 633971 | 635551 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KCOLDIBA_1 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_2 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_3 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_4 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_5 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_6 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_7 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_10 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_11 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_12 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_13 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_14 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_15 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_16 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_17 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_18 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_19 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_20 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_21 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_22 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_23 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_24 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_25 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_26 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_27 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_28 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_29 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_30 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_31 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_32 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_33 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_34 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_35 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_37 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_38 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_39 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_40 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_41 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_42 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_43 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_44 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_45 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_46 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_47 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_49 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_50 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_51 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_52 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_53 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_54 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_55 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_56 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_57 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_58 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_59 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_60 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_61 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_62 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_63 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_64 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_65 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_66 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_67 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_68 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_69 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_71 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_72 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_73 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_74 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_75 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_76 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_77 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_78 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_79 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_80 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_81 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_82 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_83 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_84 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_85 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_86 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_87 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_88 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_89 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_91 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_92 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_93 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_94 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_95 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_96 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_97 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_98 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_99 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_100 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_101 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_102 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_103 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_104 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_105 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_106 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_107 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_108 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_109 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_110 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_111 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_112 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_113 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_114 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_115 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_116 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_118 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_119 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_120 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_121 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_122 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_123 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_124 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_125 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_126 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_127 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_128 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_129 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_130 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_131 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_132 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_133 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_135 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_136 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_137 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_138 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_139 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_140 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_141 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_142 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_143 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_145 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_147 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_148 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_149 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_150 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_151 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_152 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_153 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_154 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_155 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_156 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_157 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_158 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_159 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_160 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_161 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_162 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_163 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_164 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_165 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_166 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_167 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_168 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_169 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_170 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_171 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_172 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_173 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_174 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_175 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_176 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_177 | 0.0 | 1.0 | 0.0 |
| KCOLDIBA_178 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_179 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_180 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_181 | 1.0 | 0.0 | 1.0 |
| KCOLDIBA_182 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KCOLDIBA_93 | 672869 | 682331 | False | Siphoviridae | VOG0275, |
| KCOLDIBA_93 | 928833 | 933053 | False | Myoviridae | VOG4552, |
| KCOLDIBA_104 | 169393 | 180518 | False | Myoviridae | VOG1837, |
Phigaro v2.4.0 (Database: Jan. 2024 release)