Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PGNCLGIF_202 | 777 | 2750 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
| PGNCLGIF_167 | 175 | 975 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PGNCLGIF_167 | 175 | 975 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M62487 |
| PGNCLGIF_202 | 825 | 2750 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PGNCLGIF_167 | 178 | 975 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
| PGNCLGIF_202 | 825 | 2747 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PGNCLGIF_207 | 142010 | 140430 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PGNCLGIF_1 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_2 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_3 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_4 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_5 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_6 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_7 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_8 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_9 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_10 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_11 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_12 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_13 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_14 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_15 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_16 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_17 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_18 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_19 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_20 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_21 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_22 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_23 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_24 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_25 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_26 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_27 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_28 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_29 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_30 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_31 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_32 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_33 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_34 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_35 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_36 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_38 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_39 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_40 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_41 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_42 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_43 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_44 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_45 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_46 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_47 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_48 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_49 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_50 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_51 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_52 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_53 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_54 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_55 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_56 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_58 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_59 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_60 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_61 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_62 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_63 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_64 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_65 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_66 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_67 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_68 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_69 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_70 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_71 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_72 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_73 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_74 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_75 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_76 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_77 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_78 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_79 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_80 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_81 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_82 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_83 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_84 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_85 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_86 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_87 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_88 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_89 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_90 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_91 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_92 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_93 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_94 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_95 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_96 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_97 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_98 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_99 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_100 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_101 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_102 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_103 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_104 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_105 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_106 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_107 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_108 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_109 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_110 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_111 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_112 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_113 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_114 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_115 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_116 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_117 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_118 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_119 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_120 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_121 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_122 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_123 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_124 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_125 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_126 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_127 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_128 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_129 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_130 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_131 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_132 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_133 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_134 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_135 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_136 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_137 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_138 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_139 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_140 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_141 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_142 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_143 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_144 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_145 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_146 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_147 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_148 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_149 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_150 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_151 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_152 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_153 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_154 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_155 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_156 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_157 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_158 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_159 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_160 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_161 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_162 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_163 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_164 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_165 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_166 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_167 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_168 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_169 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_170 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_171 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_172 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_173 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_174 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_175 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_176 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_177 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_178 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_179 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_180 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_181 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_182 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_183 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_184 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_185 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_186 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_187 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_188 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_189 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_190 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_191 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_192 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_193 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_194 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_195 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_196 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_197 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_198 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_199 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_200 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_201 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_202 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_203 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_204 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_205 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_206 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_207 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_208 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_209 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_210 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_211 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_212 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_214 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_215 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_216 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_217 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_218 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_219 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_220 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_221 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_222 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_223 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_224 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_225 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_226 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_227 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_228 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_229 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_230 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_231 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_232 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_233 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_234 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_235 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_236 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_237 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_238 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_239 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_240 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_241 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_242 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_243 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_244 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_245 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_246 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_247 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_248 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_249 | 0.0 | 1.0 | 0.0 |
| PGNCLGIF_250 | 1.0 | 0.0 | 1.0 |
| PGNCLGIF_251 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PGNCLGIF_166 | 22797 | 33508 | False | Unknown | VOG5821, |
| PGNCLGIF_172 | 3824 | 10623 | False | Unknown | VOG6366, |
| PGNCLGIF_207 | 77143 | 81148 | False | Unknown | VOG8253, |
Phigaro v2.4.0 (Database: Jan. 2024 release)