Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GBJOGCJC_24 | 136837 | 138762 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GBJOGCJC_24 | 136837 | 138762 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GBJOGCJC_24 | 136837 | 138759 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GBJOGCJC_165 | 118783 | 117203 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GBJOGCJC_2 | 1617 | 2296 | repUS2 | 682 / 681 | 98.39 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GBJOGCJC_1 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_2 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_3 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_4 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_5 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_6 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_7 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_8 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_9 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_10 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_11 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_12 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_13 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_14 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_15 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_16 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_17 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_18 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_19 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_20 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_21 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_22 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_23 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_24 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_25 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_26 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_27 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_28 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_29 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_30 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_31 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_32 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_33 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_34 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_35 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_36 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_37 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_38 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_39 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_40 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_41 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_42 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_43 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_44 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_45 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_46 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_47 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_48 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_49 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_50 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_51 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_52 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_53 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_54 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_55 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_56 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_57 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_58 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_59 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_60 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_61 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_62 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_63 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_64 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_65 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_66 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_67 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_68 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_69 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_70 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_71 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_72 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_73 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_74 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_75 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_76 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_77 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_78 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_79 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_80 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_81 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_82 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_83 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_84 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_85 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_86 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_87 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_88 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_89 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_90 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_91 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_92 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_93 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_94 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_95 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_96 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_97 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_98 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_99 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_100 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_101 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_102 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_103 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_104 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_105 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_106 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_107 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_108 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_109 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_110 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_111 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_112 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_113 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_114 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_115 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_116 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_117 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_118 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_119 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_121 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_122 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_123 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_124 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_125 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_126 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_127 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_128 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_129 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_130 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_131 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_132 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_133 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_134 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_136 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_137 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_138 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_139 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_140 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_141 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_142 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_143 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_144 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_145 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_146 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_147 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_148 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_150 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_151 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_152 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_153 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_154 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_155 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_156 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_157 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_158 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_159 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_160 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_161 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_162 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_163 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_164 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_165 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_166 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_167 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_168 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_169 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_170 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_171 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_172 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_173 | 0.0 | 1.0 | 0.0 |
| GBJOGCJC_174 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_175 | 1.0 | 0.0 | 1.0 |
| GBJOGCJC_176 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GBJOGCJC_121 | 113663 | 127906 | False | Unknown | VOG4572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)