Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IBOJPCEG_21 | 300453 | 299749 | WalR | 9.72e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| IBOJPCEG_36 | 73548 | 73745 | CspR | 2.86e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IBOJPCEG_35 | 24153 | 25211 | repUS75 | 1059 / 1059 | 100.00 | CP002393 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IBOJPCEG_1 | 1.0 | 0.0 | 1.0 |
| IBOJPCEG_2 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_3 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_4 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_5 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_6 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_7 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_8 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_9 | 1.0 | 0.0 | 1.0 |
| IBOJPCEG_10 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_11 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_12 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_13 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_14 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_15 | 1.0 | 0.0 | 1.0 |
| IBOJPCEG_16 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_17 | 1.0 | 0.0 | 1.0 |
| IBOJPCEG_18 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_19 | 1.0 | 0.0 | 1.0 |
| IBOJPCEG_20 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_21 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_22 | 1.0 | 0.0 | 1.0 |
| IBOJPCEG_24 | 1.0 | 0.0 | 1.0 |
| IBOJPCEG_25 | 1.0 | 0.0 | 1.0 |
| IBOJPCEG_26 | 1.0 | 0.0 | 1.0 |
| IBOJPCEG_27 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_28 | 1.0 | 0.0 | 1.0 |
| IBOJPCEG_29 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_30 | 1.0 | 0.0 | 1.0 |
| IBOJPCEG_31 | 1.0 | 0.0 | 1.0 |
| IBOJPCEG_32 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_34 | 1.0 | 0.0 | 1.0 |
| IBOJPCEG_35 | 1.0 | 0.0 | 1.0 |
| IBOJPCEG_36 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_37 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_38 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_39 | 1.0 | 0.0 | 1.0 |
| IBOJPCEG_40 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_41 | 1.0 | 0.0 | 1.0 |
| IBOJPCEG_42 | 1.0 | 0.0 | 1.0 |
| IBOJPCEG_43 | 1.0 | 0.0 | 1.0 |
| IBOJPCEG_45 | 1.0 | 0.0 | 1.0 |
| IBOJPCEG_46 | 1.0 | 0.0 | 1.0 |
| IBOJPCEG_47 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_48 | 1.0 | 0.0 | 1.0 |
| IBOJPCEG_49 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_50 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_51 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_52 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_53 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_54 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_55 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_56 | 1.0 | 0.0 | 1.0 |
| IBOJPCEG_57 | 1.0 | 0.0 | 1.0 |
| IBOJPCEG_58 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_59 | 1.0 | 0.0 | 1.0 |
| IBOJPCEG_60 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_61 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_62 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_63 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_64 | 1.0 | 0.0 | 1.0 |
| IBOJPCEG_65 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_66 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_67 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_68 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_69 | 1.0 | 0.0 | 1.0 |
| IBOJPCEG_70 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_71 | 0.0 | 1.0 | 0.0 |
| IBOJPCEG_72 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IBOJPCEG_11 | 5169 | 42009 | False | Siphoviridae | VOG4995, VOG4552, VOG0181, VOG1309, VOG0186, VOG4566, VOG0226, VOG11003, VOG9667, VOG9860, VOG6623, VOG4693, VOG9741, VOG0152, VOG3643, VOG9281, VOG0198, VOG4570, VOG10904, VOG1345, VOG4841, VOG4581, VOG4544, VOG3644, VOG4556, VOG4568, VOG4553, VOG5601, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG6163, VOG4605, VOG4599, VOG1637, VOG0054 |
Phigaro v2.4.0 (Database: Jan. 2024 release)