Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 2 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DKEJICIM_34 | 3808 | 4008 | vanU-G | glycopeptide resistance transcriptional regulator VanU-G | PARTIALX | 80.60 | 89.33 | WP_021418929.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DKEJICIM_19 | 300452 | 299748 | WalR | 9.72e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| DKEJICIM_35 | 73548 | 73745 | CspR | 4.58e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DKEJICIM_6 | 24153 | 25211 | repUS75 | 1059 / 1059 | 100.00 | CP002393 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DKEJICIM_1 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_2 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_3 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_4 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_5 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_6 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_7 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_8 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_9 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_10 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_11 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_12 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_13 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_14 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_15 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_16 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_18 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_19 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_20 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_21 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_22 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_23 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_24 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_25 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_26 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_27 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_29 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_30 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_31 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_32 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_34 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_35 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_36 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_37 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_38 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_39 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_40 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_41 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_42 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_43 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_44 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_45 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_46 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_47 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_48 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_49 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_50 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_51 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_52 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_53 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_54 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_55 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_56 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_57 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_58 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_59 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_60 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_62 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_63 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_64 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_65 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_66 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_67 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_68 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_69 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_70 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_71 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_72 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_73 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_74 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_75 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_76 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_77 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_78 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_79 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_80 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_81 | 1.0 | 0.0 | 1.0 |
| DKEJICIM_82 | 0.0 | 1.0 | 0.0 |
| DKEJICIM_83 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DKEJICIM_83 | 106359 | 144571 | False | Siphoviridae | VOG4918, VOG0054, VOG1637, VOG4599, VOG4605, VOG6163, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG1345, VOG10904, VOG4570, VOG0198, VOG9281, VOG3643, VOG0152, VOG9741, VOG4693, VOG6623, VOG9860, VOG9667, VOG11003, VOG0226, VOG4566, VOG0186, VOG1309, VOG0181, VOG4552 |
Phigaro v2.4.0 (Database: Jan. 2024 release)