Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 2 | 2 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DAOAINAE_76 | 1279 | 1923 | QnrB19 | ARO:3002734 | QnrB19 | 100.00 | 105.61 | JX298080.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DAOAINAE_76 | 1279 | 1923 | qnrB19 | Ciprofloxacin | 100.00 | 100.00 | EU432277 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DAOAINAE_76 | 1279 | 1920 | qnrB19 | quinolone resistance pentapeptide repeat protein QnrB19 | ALLELEX | 100.00 | 100.00 | WP_012954666.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| DAOAINAE_96 | 1 | 1295 | ECSMS35_RS25765 | 0.0 | Colicin E1 | Exotoxin | 88.19 | 82.50 | WP_000447001 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DAOAINAE_96 | 472 | 1295 | virulence_ecoli | cea | Colicin E1 | 99.88 | 86.92 | LT985284 |
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DAOAINAE_93 | 27024 | 26320 | WalR | 6.91e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| DAOAINAE_82 | 91418 | 91221 | CspR | 3.74e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DAOAINAE_76 | 662 | 775 | Col440I | 114 / 114 | 91.23 | CP023920.1 |
| DAOAINAE_57 | 564 | 1123 | rep38 | 561 / 903 | 90.02 | CP005943 |
| DAOAINAE_75 | 2091 | 2292 | Col8282 | 202 / 207 | 89.60 | DQ995352 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DAOAINAE_1 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_2 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_3 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_4 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_5 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_7 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_8 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_9 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_10 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_11 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_12 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_13 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_14 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_15 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_16 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_17 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_18 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_19 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_20 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_21 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_22 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_23 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_24 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_25 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_26 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_27 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_28 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_29 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_30 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_31 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_32 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_33 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_34 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_35 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_36 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_37 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_38 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_39 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_40 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_41 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_42 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_43 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_44 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_45 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_46 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_47 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_48 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_49 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_50 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_51 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_52 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_53 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_54 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_55 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_56 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_57 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_58 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_59 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_60 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_61 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_62 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_63 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_64 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_65 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_66 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_67 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_68 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_69 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_70 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_71 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_72 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_73 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_74 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_75 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_76 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_77 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_78 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_79 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_80 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_81 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_82 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_83 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_84 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_85 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_86 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_87 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_88 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_89 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_90 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_91 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_92 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_93 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_94 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_95 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_96 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_97 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_98 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_100 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_101 | 0.0 | 1.0 | 0.0 |
| DAOAINAE_102 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_103 | 1.0 | 0.0 | 1.0 |
| DAOAINAE_104 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DAOAINAE_27 | 57980 | 64115 | False | Unknown | VOG9667, VOG6495, VOG2338, VOG1309, VOG0186, VOG4855, VOG0189 |
| DAOAINAE_27 | 69778 | 104777 | False | Siphoviridae | VOG4570, VOG0796, VOG10227, VOG0720, VOG4564, VOG1300, VOG4555, VOG0694, VOG1322, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4605, VOG4599, VOG6455, VOG7896, VOG1637, VOG0054, VOG4649, VOG8155, VOG6083, VOG1246, VOG7373 |
Phigaro v2.4.0 (Database: Jan. 2024 release)