Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GHEHJLEB_86 | 27024 | 26320 | WalR | 6.85e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| GHEHJLEB_77 | 91418 | 91221 | CspR | 3.74e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GHEHJLEB_53 | 564 | 1123 | rep38 | 561 / 903 | 90.02 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GHEHJLEB_1 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_2 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_3 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_4 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_5 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_6 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_7 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_8 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_9 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_10 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_11 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_12 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_13 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_14 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_15 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_16 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_17 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_18 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_19 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_20 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_21 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_22 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_23 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_24 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_25 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_26 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_27 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_28 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_29 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_30 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_31 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_32 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_33 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_34 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_35 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_36 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_37 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_38 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_39 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_40 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_41 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_42 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_43 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_44 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_45 | 1.0 | 0.0 | 1.0 |
| GHEHJLEB_46 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_47 | 1.0 | 0.0 | 1.0 |
| GHEHJLEB_48 | 1.0 | 0.0 | 1.0 |
| GHEHJLEB_49 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_50 | 1.0 | 0.0 | 1.0 |
| GHEHJLEB_51 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_52 | 1.0 | 0.0 | 1.0 |
| GHEHJLEB_53 | 1.0 | 0.0 | 1.0 |
| GHEHJLEB_54 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_55 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_56 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_57 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_58 | 1.0 | 0.0 | 1.0 |
| GHEHJLEB_59 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_60 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_61 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_62 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_63 | 1.0 | 0.0 | 1.0 |
| GHEHJLEB_64 | 1.0 | 0.0 | 1.0 |
| GHEHJLEB_65 | 1.0 | 0.0 | 1.0 |
| GHEHJLEB_66 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_67 | 1.0 | 0.0 | 1.0 |
| GHEHJLEB_68 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_69 | 1.0 | 0.0 | 1.0 |
| GHEHJLEB_70 | 1.0 | 0.0 | 1.0 |
| GHEHJLEB_71 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_72 | 1.0 | 0.0 | 1.0 |
| GHEHJLEB_73 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_74 | 1.0 | 0.0 | 1.0 |
| GHEHJLEB_75 | 1.0 | 0.0 | 1.0 |
| GHEHJLEB_76 | 1.0 | 0.0 | 1.0 |
| GHEHJLEB_77 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_78 | 1.0 | 0.0 | 1.0 |
| GHEHJLEB_79 | 1.0 | 0.0 | 1.0 |
| GHEHJLEB_80 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_81 | 1.0 | 0.0 | 1.0 |
| GHEHJLEB_82 | 1.0 | 0.0 | 1.0 |
| GHEHJLEB_83 | 1.0 | 0.0 | 1.0 |
| GHEHJLEB_84 | 1.0 | 0.0 | 1.0 |
| GHEHJLEB_85 | 1.0 | 0.0 | 1.0 |
| GHEHJLEB_86 | 0.0 | 1.0 | 0.0 |
| GHEHJLEB_87 | 1.0 | 0.0 | 1.0 |
| GHEHJLEB_88 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GHEHJLEB_22 | 57980 | 64115 | False | Unknown | VOG9667, VOG6495, VOG2338, VOG1309, VOG0186, VOG4855, VOG0189 |
| GHEHJLEB_22 | 69778 | 104777 | False | Siphoviridae | VOG4570, VOG0796, VOG10227, VOG0720, VOG4564, VOG1300, VOG4555, VOG0694, VOG1322, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4605, VOG4599, VOG6455, VOG7896, VOG1637, VOG0054, VOG4649, VOG8155, VOG6083, VOG1246, VOG7373 |
Phigaro v2.4.0 (Database: Jan. 2024 release)