Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MKIDNKLE_62 | 129952 | 131190 | tet(40) | ARO:3000567 | tet(40) | 98.03 | 101.48 | AM419751.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MKIDNKLE_62 | 129952 | 131172 | tet(40) | Doxycycline, Tetracycline | 99.75 | 100.00 | FJ158002 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MKIDNKLE_62 | 129955 | 131172 | tet(40) | tetracycline efflux MFS transporter Tet(40) | BLASTX | 99.26 | 100.00 | WP_009247026.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MKIDNKLE_1 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_2 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_3 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_4 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_5 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_6 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_7 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_8 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_9 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_10 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_11 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_12 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_13 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_14 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_15 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_16 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_17 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_18 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_19 | 1.0 | 0.0 | 1.0 |
| MKIDNKLE_20 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_21 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_22 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_23 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_24 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_25 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_26 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_27 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_28 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_29 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_30 | 1.0 | 0.0 | 1.0 |
| MKIDNKLE_31 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_32 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_33 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_34 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_35 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_37 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_38 | 1.0 | 0.0 | 1.0 |
| MKIDNKLE_39 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_40 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_41 | 1.0 | 0.0 | 1.0 |
| MKIDNKLE_42 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_43 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_44 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_45 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_46 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_47 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_48 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_49 | 1.0 | 0.0 | 1.0 |
| MKIDNKLE_50 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_51 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_52 | 1.0 | 0.0 | 1.0 |
| MKIDNKLE_53 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_54 | 1.0 | 0.0 | 1.0 |
| MKIDNKLE_55 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_56 | 1.0 | 0.0 | 1.0 |
| MKIDNKLE_57 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_58 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_59 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_60 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_61 | 0.0 | 1.0 | 0.0 |
| MKIDNKLE_62 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MKIDNKLE_4 | 51023 | 75076 | False | Myoviridae | VOG8476, |
| MKIDNKLE_8 | 15058 | 27933 | False | Unknown | VOG6459, |
| MKIDNKLE_8 | 37009 | 53610 | False | Siphoviridae | VOG5617, |
| MKIDNKLE_11 | 243758 | 250302 | False | Unknown | VOG0705, |
| MKIDNKLE_13 | 7049 | 16186 | True | Unknown | VOG9115, |
| MKIDNKLE_19 | 4184 | 7529 | False | Myoviridae | VOG4550, |
| MKIDNKLE_62 | 109468 | 110456 | False | Myoviridae | VOG0425 |
Phigaro v2.4.0 (Database: Jan. 2024 release)