Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NCPJDPAL_78 | 3962 | 5200 | tet(40) | ARO:3000567 | tet(40) | 98.03 | 101.48 | AM419751.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NCPJDPAL_78 | 3980 | 5200 | tet(40) | Doxycycline, Tetracycline | 99.75 | 100.00 | FJ158002 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NCPJDPAL_78 | 3980 | 5197 | tet(40) | tetracycline efflux MFS transporter Tet(40) | BLASTX | 99.26 | 100.00 | WP_009247026.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NCPJDPAL_1 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_2 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_3 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_4 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_5 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_6 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_7 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_8 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_9 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_10 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_11 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_12 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_13 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_14 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_15 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_16 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_17 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_18 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_19 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_20 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_21 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_22 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_23 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_24 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_25 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_26 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_27 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_28 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_29 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_30 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_31 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_32 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_33 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_34 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_35 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_36 | 1.0 | 0.0 | 1.0 |
| NCPJDPAL_37 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_38 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_39 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_40 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_41 | 1.0 | 0.0 | 1.0 |
| NCPJDPAL_42 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_43 | 1.0 | 0.0 | 1.0 |
| NCPJDPAL_44 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_45 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_46 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_47 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_48 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_49 | 1.0 | 0.0 | 1.0 |
| NCPJDPAL_50 | 1.0 | 0.0 | 1.0 |
| NCPJDPAL_51 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_52 | 1.0 | 0.0 | 1.0 |
| NCPJDPAL_53 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_54 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_55 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_56 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_57 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_58 | 1.0 | 0.0 | 1.0 |
| NCPJDPAL_59 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_60 | 1.0 | 0.0 | 1.0 |
| NCPJDPAL_61 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_62 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_63 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_64 | 1.0 | 0.0 | 1.0 |
| NCPJDPAL_65 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_66 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_67 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_68 | 1.0 | 0.0 | 1.0 |
| NCPJDPAL_69 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_70 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_71 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_72 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_73 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_74 | 1.0 | 0.0 | 1.0 |
| NCPJDPAL_75 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_76 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_77 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_78 | 0.0 | 1.0 | 0.0 |
| NCPJDPAL_79 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NCPJDPAL_6 | 13330 | 26205 | False | Unknown | VOG6459, |
| NCPJDPAL_6 | 35281 | 64926 | False | Myoviridae | VOG5617, |
| NCPJDPAL_13 | 8710 | 17847 | True | Unknown | VOG9115, |
| NCPJDPAL_44 | 79855 | 86399 | False | Unknown | VOG0705, |
| NCPJDPAL_78 | 24694 | 25682 | False | Siphoviridae | VOG4602 |
Phigaro v2.4.0 (Database: Jan. 2024 release)