Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 3 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| LEDLNGCF_70 | 3081 | 4727 | cka | 0.0 | Colicin K | Exotoxin | 99.82 | 100.00 | CAA61099 |
| LEDLNGCF_83 | 592 | 2157 | ECSMS35_RS25765 | 0.0 | Colicin E1 | Exotoxin | 95.21 | 99.94 | WP_000447001 |
| LEDLNGCF_70 | 3838 | 4727 | cfa | 0.0 | Col5 | Exotoxin | 88.69 | 60.22 | CAA61102 |
| LEDLNGCF_70 | 3838 | 4727 | cta | 0.0 | Col10 | Exotoxin | 80.98 | 60.15 | CAA57998 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LEDLNGCF_83 | 592 | 1794 | virulence_ecoli | cea | Colicin E1 | 99.92 | 100.00 | CYCO01000082 |
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LEDLNGCF_94 | 819 | 1498 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
| LEDLNGCF_82 | 4466 | 4619 | Col156 | 154 / 154 | 94.81 | NC009781 |
| LEDLNGCF_112 | 788 | 1049 | Col(MG828) | 262 / 262 | 91.98 | NC008486 |
| LEDLNGCF_70 | 9661 | 9792 | ColRNAI | 132 / 130 | 89.39 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LEDLNGCF_1 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_2 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_3 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_5 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_6 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_7 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_8 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_9 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_10 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_11 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_12 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_13 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_14 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_15 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_16 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_17 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_18 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_19 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_20 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_21 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_22 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_23 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_24 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_25 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_26 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_27 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_28 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_29 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_30 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_31 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_32 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_33 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_34 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_35 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_36 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_37 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_38 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_39 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_40 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_41 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_42 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_43 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_44 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_45 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_46 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_47 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_48 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_49 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_50 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_51 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_52 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_53 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_54 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_55 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_56 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_57 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_58 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_59 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_60 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_61 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_62 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_63 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_64 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_65 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_66 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_67 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_68 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_69 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_70 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_71 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_72 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_73 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_74 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_75 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_76 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_77 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_78 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_79 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_80 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_81 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_82 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_83 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_84 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_85 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_86 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_87 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_88 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_89 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_90 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_91 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_92 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_93 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_94 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_95 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_96 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_97 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_99 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_100 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_101 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_102 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_103 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_104 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_105 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_106 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_107 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_108 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_110 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_111 | 0.0 | 1.0 | 0.0 |
| LEDLNGCF_112 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_113 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_114 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_115 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_116 | 1.0 | 0.0 | 1.0 |
| LEDLNGCF_117 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LEDLNGCF_23 | 77255 | 79872 | False | Siphoviridae | VOG0275, |
| LEDLNGCF_29 | 14762 | 32709 | False | Siphoviridae | VOG4360, |
| LEDLNGCF_84 | 23341 | 40230 | False | Myoviridae | VOG6585, |
Phigaro v2.4.0 (Database: Jan. 2024 release)