Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 22 | 33 | 39.71 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KINKAGAG_5 | 235660 | 236877 | mef(A) | Erythromycin, Azithromycin | 100.00 | 100.00 | U83667 |
| KINKAGAG_5 | 234077 | 235540 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | AF274302 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KINKAGAG_5 | 235663 | 236877 | mef(A) | macrolide efflux MFS transporter Mef(A) | EXACTX | 100.00 | 100.00 | WP_000417519.1 |
| KINKAGAG_5 | 234080 | 235540 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | EXACTX | 100.00 | 100.00 | WP_000420313.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| KINKAGAG_6 | 47450 | 48910 | STU_RS14650 | 0.0 | Capsule | Immune modulation | 96.92 | 100.21 | WP_011226049 |
| KINKAGAG_6 | 47450 | 48910 | STER_RS05320 | 0.0 | Capsule | Immune modulation | 96.85 | 100.00 | WP_011681177 |
| KINKAGAG_6 | 47450 | 48910 | STR_RS05265 | 0.0 | Capsule | Immune modulation | 96.03 | 100.21 | WP_041827043 |
| KINKAGAG_10 | 75797 | 76606 | STU_RS16245 | 0.0 | Capsule | Immune modulation | 95.31 | 100.00 | WP_002948020 |
| KINKAGAG_6 | 51150 | 52515 | STER_RS05300 | 0.0 | Capsule | Immune modulation | 95.09 | 99.85 | WP_011681173 |
| KINKAGAG_10 | 83744 | 84595 | rfbD | 0.0 | Capsule | Immune modulation | 95.07 | 100.00 | WP_014621820 |
| KINKAGAG_6 | 50353 | 51093 | STER_RS05305 | 0.0 | Capsule | Immune modulation | 94.87 | 100.00 | WP_011681174 |
| KINKAGAG_6 | 51150 | 52517 | STU_RS14630 | 0.0 | Capsule | Immune modulation | 94.59 | 100.00 | WP_011226045 |
| KINKAGAG_6 | 50353 | 51093 | STU_RS14635 | 0.0 | Capsule | Immune modulation | 94.33 | 100.00 | WP_011226046 |
| KINKAGAG_8 | 2648 | 3931 | tig/ropA | 0.0 | Trigger factor | Stress survival | 94.08 | 100.00 | WP_011225339 |
| KINKAGAG_6 | 50353 | 51088 | STR_RS05250 | 0.0 | Capsule | Immune modulation | 93.89 | 98.13 | WP_011227246 |
| KINKAGAG_6 | 48911 | 49642 | STER_RS05315 | 0.0 | Capsule | Immune modulation | 93.85 | 100.00 | WP_011681176 |
| KINKAGAG_6 | 48911 | 49642 | STU_RS14645 | 0.0 | Capsule | Immune modulation | 93.72 | 100.00 | WP_011226048 |
| KINKAGAG_10 | 81372 | 82643 | STU_RS16265 | 0.0 | Capsule | Immune modulation | 93.71 | 99.76 | WP_011226331 |
| KINKAGAG_10 | 74592 | 75797 | STU_RS16240 | 0.0 | Capsule | Immune modulation | 93.53 | 100.00 | WP_011226326 |
| KINKAGAG_6 | 48911 | 49642 | STR_RS05260 | 0.0 | Capsule | Immune modulation | 93.17 | 100.00 | WP_011227248 |
| KINKAGAG_10 | 71757 | 73541 | STU_RS16230 | 0.0 | Capsule | Immune modulation | 92.94 | 100.00 | WP_011226325 |
| KINKAGAG_10 | 77543 | 78691 | STU_RS16255 | 0.0 | Capsule | Immune modulation | 92.17 | 100.00 | WP_041828290 |
| KINKAGAG_5 | 80137 | 80730 | STR_RS05880 | 0.0 | Capsule | Immune modulation | 91.92 | 100.00 | WP_011226149 |
| KINKAGAG_5 | 80137 | 80730 | STER_RS06030 | 0.0 | Capsule | Immune modulation | 91.75 | 100.00 | WP_011226149 |
| KINKAGAG_5 | 80137 | 80730 | STU_RS15260 | 0.0 | Capsule | Immune modulation | 91.75 | 100.00 | WP_011226149 |
| KINKAGAG_10 | 73538 | 74572 | STU_RS16235 | 0.0 | Capsule | Immune modulation | 91.39 | 99.05 | WP_002948022 |
| KINKAGAG_10 | 76590 | 77546 | STU_RS16250 | 0.0 | Capsule | Immune modulation | 91.33 | 100.00 | WP_011226328 |
| KINKAGAG_5 | 80730 | 81599 | rfbA | 0.0 | Capsule | Immune modulation | 91.03 | 100.00 | WP_011681286 |
| KINKAGAG_12 | 20712 | 21551 | cbpD | 0.0 | Autolysin | Exoenzyme | 90.95 | 100.00 | WP_011226733 |
| KINKAGAG_6 | 157034 | 158692 | fbp54 | 0.0 | FBPs | Adherence | 90.36 | 99.94 | WP_011227179 |
| KINKAGAG_7 | 14388 | 15398 | plr/gapA | 0.0 | Streptococcal plasmin receptor/GAPDH | Adherence | 88.65 | 99.80 | WP_002986042 |
| KINKAGAG_6 | 49651 | 50343 | STR_RS05255 | 0.0 | Capsule | Immune modulation | 88.47 | 99.86 | WP_011227247 |
| KINKAGAG_6 | 49651 | 50343 | STU_RS14640 | 0.0 | Capsule | Immune modulation | 88.47 | 99.86 | WP_011226047 |
| KINKAGAG_5 | 261061 | 262364 | eno | 0.0 | Streptococcal enolase | Exoenzyme | 88.47 | 99.54 | WP_000022832 |
| KINKAGAG_6 | 49651 | 50343 | STER_RS05310 | 0.0 | Capsule | Immune modulation | 88.18 | 99.86 | WP_011681175 |
| KINKAGAG_6 | 313177 | 313938 | srtA | 0.0 | Sortase A | Exoenzyme | 84.03 | 99.74 | - |
| KINKAGAG_5 | 78888 | 79934 | rfbB | 0.0 | Capsule | Immune modulation | 80.42 | 100.00 | WP_009659423 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KINKAGAG_6 | 316628 | 317602 | ldh(Sp_1220) | 0.0 | L-lactate dehydrogenase | 96.92 | 99.09 | AAK75326 |
| KINKAGAG_6 | 305047 | 303974 | MntE | 0.0 | manganese homeostasis | 95.25 | 99.72 | ABF32167 |
| KINKAGAG_7 | 146384 | 144078 | pfl2(Sp_0459) | 0.0 | formate acetyltransferase | 94.41 | 99.22 | AAK74619 |
| KINKAGAG_5 | 352161 | 351193 | spr0084 | 0.0 | pathogenitcity related | 93.19 | 98.48 | AAK98888 |
| KINKAGAG_6 | 471973 | 473454 | SPD_0310 | 0.0 | UPF0371 protein SPD_0310 | 93.12 | 100.00 | ABJ54480 |
| KINKAGAG_6 | 276992 | 274746 | metE | 0.0 | methionine biosynthesis enzymes | 92.39 | 100.00 | AAK74738 |
| KINKAGAG_12 | 35936 | 34965 | prsA2 | 0.0 | ribose-phosphate pyrophosphokinase | 91.36 | 100.00 | ABF36968 |
| KINKAGAG_7 | 296920 | 298068 | potA | 0.0 | ABC transporter ATP-binding protein-spermidine/putrescine transport | 90.08 | 99.48 | AAL00050 |
| KINKAGAG_5 | 106984 | 105254 | ptsI | 0.0 | phosphoenolpyruvate-protein phosphotransferase | 89.95 | 100.00 | AAK34199 |
| KINKAGAG_10 | 97991 | 96003 | uvrB | 0.0 | excinuclease ABC, B subunit | 89.59 | 100.00 | AE014259_2 |
| KINKAGAG_9 | 163546 | 162068 | IMPDH | 0.0 | inosine-5'-monophosphate dehydrogenase | 87.63 | 100.00 | ADE32434 |
| KINKAGAG_5 | 262364 | 261063 | Eno | 0.0 | enolase | 86.44 | 99.77 | ABP90468 |
| KINKAGAG_9 | 148223 | 146331 | gidA | 0.0 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme | 85.26 | 98.90 | ABP91129 |
| KINKAGAG_6 | 271827 | 273536 | PGM | 0.0 | phosphoglucomutase | 84.76 | 99.65 | ACH87041 |
| KINKAGAG_12 | 2042 | 951 | recA | 0.0 | DNA recombination and repair | 84.64 | 95.36 | AAL00560 |
| KINKAGAG_9 | 28754 | 29764 | pdh | 0.0 | pyruvate dehydrogenase | 82.79 | 99.70 | ABP91006 |
| KINKAGAG_6 | 143513 | 144874 | mnmE | 0.0 | central tRNA-modifying GTPase | 82.46 | 99.56 | ABP90420 |
| KINKAGAG_5 | 276774 | 275884 | bglB | 6.78e-178 | putative phospho--glucosidase | 87.88 | 99.66 | AAK33487 |
| KINKAGAG_6 | 231178 | 232128 | SP_0676 | 1.41e-169 | transcription facot | 81.39 | 98.45 | AAK74821 |
| KINKAGAG_6 | 274559 | 273702 | metF | 1.15e-167 | methionine biosynthesis enzymes | 87.06 | 99.31 | AAK74739 |
| KINKAGAG_6 | 399858 | 399187 | rr01 | 1.00e-126 | response regulator | 84.82 | 99.56 | CAB54566 |
| KINKAGAG_6 | 1884 | 2588 | covR | 8.29e-126 | responder protein | 85.11 | 100.00 | AAK71319 |
| KINKAGAG_6 | 267859 | 267188 | ciaR | 2.34e-124 | two component system response regulator | 85.71 | 99.12 | AIK75708 |
| KINKAGAG_6 | 267859 | 267191 | CiaR | 2.90e-124 | two-component response regulator | 87.00 | 99.55 | AAK74935 |
| KINKAGAG_8 | 162188 | 162874 | CovR | 4.80e-120 | serves to repress GAS virulence factor-encoding genes | 81.66 | 100.00 | ACE75886 |
| KINKAGAG_6 | 1884 | 2588 | walR | 1.52e-119 | DNA-binding response regulator | 81.70 | 100.00 | ANC99504 |
| KINKAGAG_12 | 777 | 382 | SpxA2 | 3.95e-76 | transcriptional regulator | 91.67 | 100.00 | ERL21461 |
| KINKAGAG_6 | 132047 | 131646 | SpxA1 | 5.79e-69 | transcriptional regulator | 82.09 | 100.00 | ERL19273 |
| KINKAGAG_11 | 6355 | 5942 | GrpE | 9.69e-68 | protein grpE | 81.16 | 80.59 | ABP89267 |
| KINKAGAG_8 | 185967 | 186254 | spr0479 | 5.81e-48 | essential gene | 85.42 | 98.97 | AAK99283 |
| KINKAGAG_5 | 388563 | 388309 | spr1327 | 2.48e-44 | essential gene | 92.94 | 100.00 | AAL00131 |
| KINKAGAG_9 | 117226 | 117489 | spr0175 | 9.79e-43 | pathogenitcity related | 85.23 | 100.00 | AAK98979 |
| KINKAGAG_9 | 118052 | 118318 | spr0177 | 1.36e-41 | essential gene | 83.15 | 88.12 | AAK98981 |
| KINKAGAG_8 | 4098 | 4589 | RopE (M5005_Spy_1611) | 1.06e-72 | probable DNA-directed RNA polymerase subunit delta | 82.93 | 85.86 | AAK34603 |
| KINKAGAG_7 | 146384 | 144084 | PFL (B9H01_RS01125) | 0.0 | formate C-acetyltransferase | 83.09 | 98.08 | MYN69560 |
| KINKAGAG_9 | 65476 | 64457 | ilvC (SPD_0406) | 0.0 | ketol-acid reductoisomerase (NADP(+)) | 96.77 | 100.00 | ABJ55451 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KINKAGAG_1 | 0.0 | 1.0 | 0.0 |
| KINKAGAG_2 | 0.0 | 1.0 | 0.0 |
| KINKAGAG_3 | 1.0 | 0.0 | 1.0 |
| KINKAGAG_4 | 0.0 | 1.0 | 0.0 |
| KINKAGAG_5 | 0.0 | 1.0 | 0.0 |
| KINKAGAG_6 | 0.0 | 1.0 | 0.0 |
| KINKAGAG_7 | 0.0 | 1.0 | 0.0 |
| KINKAGAG_8 | 0.0 | 1.0 | 0.0 |
| KINKAGAG_9 | 0.0 | 1.0 | 0.0 |
| KINKAGAG_10 | 0.0 | 1.0 | 0.0 |
| KINKAGAG_11 | 0.0 | 1.0 | 0.0 |
| KINKAGAG_12 | 0.0 | 1.0 | 0.0 |
| KINKAGAG_13 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)