Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MCGGAMID_108 | 137730 | 138695 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| MCGGAMID_9 | 77018 | 78943 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| MCGGAMID_69 | 12973 | 13773 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| MCGGAMID_53 | 7644 | 8381 | ErmB | ARO:3000375 | ErmB | 98.37 | 98.79 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MCGGAMID_108 | 137730 | 138695 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| MCGGAMID_108 | 137730 | 138695 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| MCGGAMID_108 | 137730 | 138695 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| MCGGAMID_108 | 137730 | 138695 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| MCGGAMID_53 | 7644 | 8381 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.86 | 100.00 | U18931 |
| MCGGAMID_69 | 12973 | 13773 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| MCGGAMID_9 | 77018 | 78943 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 90.45 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MCGGAMID_108 | 137733 | 138695 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| MCGGAMID_53 | 7644 | 8378 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.59 | 100.00 | WP_002292226.1 |
| MCGGAMID_69 | 12976 | 13773 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| MCGGAMID_9 | 77018 | 78940 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MCGGAMID_53 | 107270 | 108850 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MCGGAMID_1 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_2 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_3 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_4 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_5 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_6 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_7 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_9 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_10 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_11 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_12 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_14 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_15 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_16 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_17 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_18 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_19 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_20 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_21 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_22 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_23 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_24 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_25 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_26 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_27 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_28 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_29 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_30 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_31 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_32 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_33 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_34 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_35 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_36 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_37 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_38 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_39 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_40 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_41 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_42 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_43 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_44 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_45 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_46 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_47 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_48 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_49 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_50 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_51 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_52 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_53 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_54 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_55 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_56 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_57 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_58 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_59 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_60 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_61 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_62 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_63 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_64 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_65 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_66 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_67 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_68 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_69 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_70 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_71 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_72 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_73 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_74 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_75 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_76 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_77 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_78 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_79 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_80 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_81 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_82 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_83 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_84 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_85 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_86 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_87 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_88 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_89 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_90 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_91 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_92 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_93 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_94 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_95 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_96 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_97 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_98 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_99 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_100 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_101 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_102 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_103 | 0.0 | 1.0 | 0.0 |
| MCGGAMID_104 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_105 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_106 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_107 | 1.0 | 0.0 | 1.0 |
| MCGGAMID_108 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MCGGAMID_34 | 29753 | 44003 | False | Unknown | VOG3992, |
| MCGGAMID_45 | 9964 | 19484 | False | Siphoviridae | VOG4552, |
Phigaro v2.4.0 (Database: Jan. 2024 release)